Hi,
Can anyone help me for merge the following multi-line log which beginning with a number and time: into one line. For each line need to delete the return and add a space. Please see the red color line.
*****Original Log*****... (4 Replies)
Hi,
Can anyone know how to use perl to merge the following multi-line information which beginning with "BAM" into one line. For each line need to delete the return and add a space. Please see the red color line.
******Org. Multi-line)
BAM admin 101.203.57.22 ... (3 Replies)
Hello,
Can anyone let me know how to use Perl script to Merge following multi-lines into one single line...
***** Multi-line*****
FILE_Write root OK Tue Jul 01 00:00:00 2008 cl_get_path
file descriptor = 1
FILE_Write root OK ... (5 Replies)
Hello,
Did anyone know how to write a perl script to merge the multi-line into a single line where each line with start at timestamp
Input-->
timestamp=2009-11-10-04.55.20.829347;
a;
b;
c;
timestamp=2009-11-10-04.55.20.829347;
aa;
bb;
cc; (5 Replies)
Hello
I did do a search and the past threads doesn't really solve my issue. (using various awk commands)
I need to combine the output from java -version into 1 line, but I am having difficulties.
When you exec java -version, you get:
java version "1.5.0_06"
Java(TM) 2 Runtime... (5 Replies)
HI,
My input file contains the data as like below:
A1234119993
B6271113
Bghjkjk
A1234119992
B6271113hi
Bghjkjkmkl
the output i require is :
A1234119993 B6271113 Bghjkjk
A1234119992 B6271113hi Bghjkjkmkl
Please help me in this.
Thanks (6 Replies)
Hi,
My Oracle query is returing below o/p
----------------------------------------------------------
Ins trnas value
a lkp1 x
a lkp1 y
b lkp1 a
b lkp2 x
b lkp2 y ... (7 Replies)
I have a file with data records separated by multiple equals signs, as below.
==========
RECORD 1
==========
RECORD 2
DATA LINE
==========
RECORD 3
==========
RECORD 4
DATA LINE
==========
RECORD 5
DATA LINE
==========
I need to filter out all data from this file where the... (2 Replies)
Hi,
I am trying to remove multi line and single line comments like examples below
I have tried this pattern. it works fine for single line comments and multi line comments in a single line only. but this fails when the comments are extended in multiple lines as shown in the comment 2 of... (3 Replies)
I want to read the log file which was generate from other command . And the output was having multi line in log files for job name and server name. But i need to make all the logs on one line
Source file
07/15/2018 17:02:00 TRANSLOG_1700 Server0005_SQL ... (2 Replies)
Discussion started by: ranjancom2000
2 Replies
LEARN ABOUT DEBIAN
bp_mask_by_search
BP_MASK_BY_SEARCH(1p) User Contributed Perl Documentation BP_MASK_BY_SEARCH(1p)NAME
mask_by_search - mask sequence(s) based on its alignment results
SYNOPSIS
mask_by_search.pl -f blast genomefile blastfile.bls > maskedgenome.fa
DESCRIPTION
Mask sequence based on significant alignments of another sequence. You need to provide the report file and the entire sequence data which
you want to mask. By default this will assume you have done a TBLASTN (or TFASTY) and try and mask the hit sequence assuming you've
provided the sequence file for the hit database. If you would like to do the reverse and mask the query sequence specify the -t/--type
query flag.
This is going to read in the whole sequence file into memory so for large genomes this may fall over. I'm using DB_File to prevent keeping
everything in memory, one solution is to split the genome into pieces (BEFORE you run the DB search though, you want to use the exact file
you BLASTed with as input to this program).
Below the double dash (--) options are of the form --format=fasta or --format fasta or you can just say -f fasta
By -f/--format I mean either are acceptable options. The =s or =n or =c specify these arguments expect a 'string'
Options:
-f/--format=s Search report format (fasta,blast,axt,hmmer,etc)
-sf/--sformat=s Sequence format (fasta,genbank,embl,swissprot)
--hardmask (booelean) Hard mask the sequence
with the maskchar [default is lowercase mask]
--maskchar=c Character to mask with [default is N], change
to 'X' for protein sequences
-e/--evalue=n Evalue cutoff for HSPs and Hits, only
mask sequence if alignment has specified evalue
or better
-o/--out/
--outfile=file Output file to save the masked sequence to.
-t/--type=s Alignment seq type you want to mask, the
'hit' or the 'query' sequence. [default is 'hit']
--minlen=n Minimum length of an HSP for it to be used
in masking [default 0]
-h/--help See this help information
AUTHOR - Jason Stajich
Jason Stajich, jason-at-bioperl-dot-org.
perl v5.14.2 2012-03-02 BP_MASK_BY_SEARCH(1p)