It seems like no work when my data is huge?
eg.
Input file
Output file
Desired Output file
I believe fold command will take header into account too?
I wanna split a single-line multi-fasta (exclude >header) into 10 words/symbols per line multi-fasta file.
Hi,
Can anyone help me for merge the following multi-line log which beginning with a number and time: into one line. For each line need to delete the return and add a space. Please see the red color line.
*****Original Log*****... (4 Replies)
Hi,
Can anyone know how to use perl to merge the following multi-line information which beginning with "BAM" into one line. For each line need to delete the return and add a space. Please see the red color line.
******Org. Multi-line)
BAM admin 101.203.57.22 ... (3 Replies)
Hello,
Can anyone let me know how to use Perl script to Merge following multi-lines into one single line...
***** Multi-line*****
FILE_Write root OK Tue Jul 01 00:00:00 2008 cl_get_path
file descriptor = 1
FILE_Write root OK ... (5 Replies)
Hello,
Did anyone know how to write a perl script to merge the multi-line into a single line where each line with start at timestamp
Input-->
timestamp=2009-11-10-04.55.20.829347;
a;
b;
c;
timestamp=2009-11-10-04.55.20.829347;
aa;
bb;
cc; (5 Replies)
Hello
I did do a search and the past threads doesn't really solve my issue. (using various awk commands)
I need to combine the output from java -version into 1 line, but I am having difficulties.
When you exec java -version, you get:
java version "1.5.0_06"
Java(TM) 2 Runtime... (5 Replies)
HI,
My input file contains the data as like below:
A1234119993
B6271113
Bghjkjk
A1234119992
B6271113hi
Bghjkjkmkl
the output i require is :
A1234119993 B6271113 Bghjkjk
A1234119992 B6271113hi Bghjkjkmkl
Please help me in this.
Thanks (6 Replies)
Hi,
My Oracle query is returing below o/p
----------------------------------------------------------
Ins trnas value
a lkp1 x
a lkp1 y
b lkp1 a
b lkp2 x
b lkp2 y ... (7 Replies)
I have a file with data records separated by multiple equals signs, as below.
==========
RECORD 1
==========
RECORD 2
DATA LINE
==========
RECORD 3
==========
RECORD 4
DATA LINE
==========
RECORD 5
DATA LINE
==========
I need to filter out all data from this file where the... (2 Replies)
Hi,
I am trying to remove multi line and single line comments like examples below
I have tried this pattern. it works fine for single line comments and multi line comments in a single line only. but this fails when the comments are extended in multiple lines as shown in the comment 2 of... (3 Replies)
I want to read the log file which was generate from other command . And the output was having multi line in log files for job name and server name. But i need to make all the logs on one line
Source file
07/15/2018 17:02:00 TRANSLOG_1700 Server0005_SQL ... (2 Replies)
Discussion started by: ranjancom2000
2 Replies
LEARN ABOUT DEBIAN
reprof
REPROF(1) User Commands REPROF(1)NAME
reprof - predict protein secondary structure and solvent accessibility
SYNOPSIS
reprof -i [query.blastPsiMat] [OPTIONS]
reprof -i [query.fasta] [OPTIONS]
reprof -i [query.blastPsiMat|query.fasta] --mutations [mutations.txt] [OPTIONS]
DESCRIPTION
Predict protein secondary structure and solvent accessibility.
Output Format
The output format is self-explanatory, i.e. the colums of the output are described in the output file itself.
OPTIONS -i, --input=FILE
Input BLAST PSSM matrix file (from Blast -Q option) or input (single) FASTA file.
-o, --out=FILE
Either an output file or a directory. If not provided or a directory, the suffix of the input filename (i.e. .fasta or .blastPsiMat) is
replaced to create an output filename.
--mutations=[all|FILE]
Either the keyword "all" to predict all possible mutations or a file containing mutations one per line such as "C12M" for C is mutated
to M on position 12:
C30Y
R31W
G48D
This mutation code is also attached to the output filename using "_". An additional file ending "_ORI" contains the prediction using
no evolutionary information even if a BLAST PSSM matrix was provided.
--modeldir=DIR
Directory where the model and feature files are stored. Default: /usr/share/reprof.
AUTHOR
Peter Hoenigschmid hoenigschmid@rostlab.org, Burkhard Rost
EXAMPLES
Prediction from BLAST PSSM matrix for best results:
reprof -i /usr/share/doc/reprof/examples/example.Q -o /tmp/example.Q.reprof
Prediction from FASTA file:
reprof -i /usr/share/doc/reprof/examples/example.fasta -o /tmp/example.fasta.reprof
Prediction from BLAST PSSM matrix file using the mutation mode:
reprof -i /usr/share/doc/reprof/examples/example.Q -o /tmp/mutations_example.Q.reprof --mutations /usr/share/doc/reprof/examples/mutations.txt
# Result files for the above call are going to be:
# /tmp/mutations_example.Q.{reprof,reprof_F172P,reprof_M1Q,reprof_N34Y,reprof_ORI} - see --mutations for a description of the extensions.
COPYRIGHT
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>.
BUGS
https://rostlab.org/bugzilla3/enter_bug.cgi?product=reprof
SEE ALSO blast2(1)
http://rostlab.org/
1.0.1 2012-01-13 REPROF(1)