|
|
Sponsored Content
Top Forums
Shell Programming and Scripting
Help with reformat single-line multi-fasta into multi-line multi-fasta
Post 303018685 by RudiC on Wednesday 13th of June 2018 06:27:44 AM
06-13-2018
|
|
10 More Discussions You Might Find Interesting
1. Shell Programming and Scripting
Hi,
Can anyone help me for merge the following multi-line log which beginning with a number and time: into one line. For each line need to delete the return and add a space. Please see the red color line.
*****Original Log*****... (4 Replies)
Discussion started by: happyday
4 Replies
2. Shell Programming and Scripting
Hi,
Can anyone know how to use perl to merge the following multi-line information which beginning with "BAM" into one line. For each line need to delete the return and add a space. Please see the red color line.
******Org. Multi-line)
BAM admin 101.203.57.22 ... (3 Replies)
Discussion started by: happyday
3 Replies
3. Shell Programming and Scripting
Hello,
Can anyone let me know how to use Perl script to Merge following multi-lines into one single line...
***** Multi-line*****
FILE_Write root OK Tue Jul 01 00:00:00 2008 cl_get_path
file descriptor = 1
FILE_Write root OK ... (5 Replies)
Discussion started by: happyday
5 Replies
4. Shell Programming and Scripting
Hello,
Did anyone know how to write a perl script to merge the multi-line into a single line where each line with start at timestamp
Input-->
timestamp=2009-11-10-04.55.20.829347;
a;
b;
c;
timestamp=2009-11-10-04.55.20.829347;
aa;
bb;
cc; (5 Replies)
Discussion started by: happyday
5 Replies
5. Shell Programming and Scripting
Hello
I did do a search and the past threads doesn't really solve my issue. (using various awk commands)
I need to combine the output from java -version into 1 line, but I am having difficulties.
When you exec java -version, you get:
java version "1.5.0_06"
Java(TM) 2 Runtime... (5 Replies)
Discussion started by: flagman5
5 Replies
6. Shell Programming and Scripting
HI,
My input file contains the data as like below:
A1234119993
B6271113
Bghjkjk
A1234119992
B6271113hi
Bghjkjkmkl
the output i require is :
A1234119993 B6271113 Bghjkjk
A1234119992 B6271113hi Bghjkjkmkl
Please help me in this.
Thanks (6 Replies)
Discussion started by: pandeesh
6 Replies
7. Shell Programming and Scripting
Hi,
My Oracle query is returing below o/p
----------------------------------------------------------
Ins trnas value
a lkp1 x
a lkp1 y
b lkp1 a
b lkp2 x
b lkp2 y ... (7 Replies)
Discussion started by: gvk25
7 Replies
8. Shell Programming and Scripting
I have a file with data records separated by multiple equals signs, as below.
==========
RECORD 1
==========
RECORD 2
DATA LINE
==========
RECORD 3
==========
RECORD 4
DATA LINE
==========
RECORD 5
DATA LINE
==========
I need to filter out all data from this file where the... (2 Replies)
Discussion started by: Finja
2 Replies
9. UNIX for Dummies Questions & Answers
Hi,
I am trying to remove multi line and single line comments like examples below
I have tried this pattern. it works fine for single line comments and multi line comments in a single line only. but this fails when the comments are extended in multiple lines as shown in the comment 2 of... (3 Replies)
Discussion started by: ahmedwaseem2000
3 Replies
10. Shell Programming and Scripting
I want to read the log file which was generate from other command . And the output was having multi line in log files for job name and server name. But i need to make all the logs on one line
Source file
07/15/2018 17:02:00 TRANSLOG_1700 Server0005_SQL ... (2 Replies)
Discussion started by: ranjancom2000
2 Replies
LEARN ABOUT DEBIAN
sim2gff
SIM2GFF(1) General Commands Manual SIM2GFF(1) NAME
sim2gff - Converts SIM file into GFF formatted records SYNOPSIS
sim2gff [-frxyHh] sim_file > gff_file DESCRIPTION
This manual page documents briefly the sim2gff command. sim2gff is a program written in Perl that converts SIM file into GFF formatted records (for use with gff2aplot and gff2javaplot). OPTIONS
-h, --help Show summary of options. -f Output is written to a file named <sim_file>.gff. -r Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis). -x <name> Specify the species name for species1 (default: "Seq1"). -y <name> Specify the species name for species2 (default: "Seq2"). -H Use the fasta file headers for species labels. EXIT STATUS
The following perl-like exit status are returned: 0 Error 1 Successful completion SEE ALSO
ali2gff(1), blat2gff(1), gff2aplot(1), parseblast(1). AUTHOR
sim2gff was written by Thomas Wiehe <twiehe@imb-jena.de>. This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others). Mon, 21 Mar 2005 21:44:15 -0300 SIM2GFF(1)