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Shell Programming and Scripting
Help with reformat single-line multi-fasta into multi-line multi-fasta
Post 303018681 by patrick87 on Wednesday 13th of June 2018 06:09:25 AM
06-13-2018
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1. Shell Programming and Scripting
Hi,
Can anyone help me for merge the following multi-line log which beginning with a number and time: into one line. For each line need to delete the return and add a space. Please see the red color line.
*****Original Log*****... (4 Replies)
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2. Shell Programming and Scripting
Hi,
Can anyone know how to use perl to merge the following multi-line information which beginning with "BAM" into one line. For each line need to delete the return and add a space. Please see the red color line.
******Org. Multi-line)
BAM admin 101.203.57.22 ... (3 Replies)
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Hello,
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***** Multi-line*****
FILE_Write root OK Tue Jul 01 00:00:00 2008 cl_get_path
file descriptor = 1
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4. Shell Programming and Scripting
Hello,
Did anyone know how to write a perl script to merge the multi-line into a single line where each line with start at timestamp
Input-->
timestamp=2009-11-10-04.55.20.829347;
a;
b;
c;
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aa;
bb;
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HI,
My input file contains the data as like below:
A1234119993
B6271113
Bghjkjk
A1234119992
B6271113hi
Bghjkjkmkl
the output i require is :
A1234119993 B6271113 Bghjkjk
A1234119992 B6271113hi Bghjkjkmkl
Please help me in this.
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Hi,
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----------------------------------------------------------
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LEARN ABOUT DEBIAN
ali2gff
ALI2GFF(1) General Commands Manual ALI2GFF(1) NAME
ali2gff - Module to translate a MUMmer output files into gff formatted output. SYNOPSIS
ali2gff [-r] [-t <.|0|1|2>] [-x <name>] [-y <name>] [-H] [-f] [-h] <MUMmer_output_file> OPTIONS
-h, --help Show summary of options. -r Interchange the order of sequences (sequence 1 on y-axis, sequence 2 on x-axis). -t <.|0|1|2> Put label 'frame' in gff output. -x <name> Specify the species name for species1 (default: "Seq1"). -y <name> Specify the species name for species2 (default: "Seq2"). -i Ignore full sequence identities. -f Write output to file. SEE ALSO
blat2gff(1), gff2aplot(1), parseblast(1), sim2gff(1). AUTHOR
ali2gff was written by Steffi Gebauer-Jung. This manual page was written by Nelson A. de Oliveira <naoliv@gmail.com>, for the Debian project (but may be used by others). Mon, 21 Mar 2005 21:44:15 -0300 ALI2GFF(1)