Hi,
Can anyone help me for merge the following multi-line log which beginning with a number and time: into one line. For each line need to delete the return and add a space. Please see the red color line.
*****Original Log*****... (4 Replies)
Hi,
Can anyone know how to use perl to merge the following multi-line information which beginning with "BAM" into one line. For each line need to delete the return and add a space. Please see the red color line.
******Org. Multi-line)
BAM admin 101.203.57.22 ... (3 Replies)
Hello,
Can anyone let me know how to use Perl script to Merge following multi-lines into one single line...
***** Multi-line*****
FILE_Write root OK Tue Jul 01 00:00:00 2008 cl_get_path
file descriptor = 1
FILE_Write root OK ... (5 Replies)
Hello,
Did anyone know how to write a perl script to merge the multi-line into a single line where each line with start at timestamp
Input-->
timestamp=2009-11-10-04.55.20.829347;
a;
b;
c;
timestamp=2009-11-10-04.55.20.829347;
aa;
bb;
cc; (5 Replies)
Hello
I did do a search and the past threads doesn't really solve my issue. (using various awk commands)
I need to combine the output from java -version into 1 line, but I am having difficulties.
When you exec java -version, you get:
java version "1.5.0_06"
Java(TM) 2 Runtime... (5 Replies)
HI,
My input file contains the data as like below:
A1234119993
B6271113
Bghjkjk
A1234119992
B6271113hi
Bghjkjkmkl
the output i require is :
A1234119993 B6271113 Bghjkjk
A1234119992 B6271113hi Bghjkjkmkl
Please help me in this.
Thanks (6 Replies)
Hi,
My Oracle query is returing below o/p
----------------------------------------------------------
Ins trnas value
a lkp1 x
a lkp1 y
b lkp1 a
b lkp2 x
b lkp2 y ... (7 Replies)
I have a file with data records separated by multiple equals signs, as below.
==========
RECORD 1
==========
RECORD 2
DATA LINE
==========
RECORD 3
==========
RECORD 4
DATA LINE
==========
RECORD 5
DATA LINE
==========
I need to filter out all data from this file where the... (2 Replies)
Hi,
I am trying to remove multi line and single line comments like examples below
I have tried this pattern. it works fine for single line comments and multi line comments in a single line only. but this fails when the comments are extended in multiple lines as shown in the comment 2 of... (3 Replies)
I want to read the log file which was generate from other command . And the output was having multi line in log files for job name and server name. But i need to make all the logs on one line
Source file
07/15/2018 17:02:00 TRANSLOG_1700 Server0005_SQL ... (2 Replies)
Discussion started by: ranjancom2000
2 Replies
LEARN ABOUT DEBIAN
kalign
KALIGN(1) Kalign User Manual KALIGN(1)NAME
kalign - performs multiple alignment of biological sequences.
SYNOPSIS
kalign [infile.fasta] [outfile.fasta] [Options]
kalign [-i infile.fasta] [-o outfile.fasta] [Options]
kalign [< infile.fasta] [> outfile.fasta] [Options]
DESCRIPTION
Kalign is a command line tool to perform multiple alignment of biological sequences. It employs the Muth?Manber string-matching algorithm,
to improve both the accuracy and speed of the alignment. It uses global, progressive alignment approach, enriched by employing an
approximate string-matching algorithm to calculate sequence distances and by incorporating local matches into the otherwise global
alignment.
OPTIONS -s -gpo -gapopen -gap_open x
Gap open penalty .
-e -gpe -gap_ext -gapextension x
Gap extension penalty.
-t -tgpe -terminal_gap_extension_penalty x
Terminal gap penalties.
-m -bonus -matrix_bonus x
A constant added to the substitution matrix.
-c -sort <input, tree, gaps.>
The order in which the sequences appear in the output alignment.
-g -feature
Selects feature mode and specifies which features are to be used: e.g. all, maxplp, STRUCT, PFAM-A?
-same_feature_score
Score for aligning same features.
-diff_feature_score
Penalty for aligning different features.
-d -distance <wu, pair>
Distance method
-b -tree -guide-tree <nj, upgma>
Guide tree method.
-z -zcutoff
Parameter used in the wu-manber based distance calculation.
-i -in -input
Name of the input file.
-o -out -output
Name of the output file.
-a -gap_inc
Increases gap penalties depending on the number of existing gaps.
-f -format <fasta, msf, aln, clu, macsim>
The output format.
-q -quiet
Print nothing to STDERR. Read nothing from STDIN.
REFERENCES
o Timo Lassmann and Erik L.L. Sonnhammer (2005) Kalign - an accurate and fast multiple sequence alignment algorithm. BMC Bioinformatics
6:298
o Timo Lassmann, Oliver Frings and Erik L. L. Sonnhammer (2009) Kalign2: high-performance multiple alignment of protein and nucleotide
sequences allowing external features. Nucleic Acid Research 3:858?865.
AUTHORS
Timo Lassmann <timolassmann@gmail.com>
Upstream author of Kalign.
Charles Plessy <plessy@debian.org>
Wrote the manpage.
COPYRIGHT
Copyright (C) 2004, 2005, 2006, 2007, 2008 Timo Lassmann
Kalign is free software. You can redistribute it and/or modify it under the terms of the GNU General Public License as published by the
Free Software Foundation.
This manual page was written by Charles Plessy <plessy@debian.org> for the Debian(TM) system (but may be used by others). Permission is
granted to copy, distribute and/or modify this document under the same terms as kalign itself.
On Debian systems, the complete text of the GNU General Public License version 2 can be found in /usr/share/common-licenses/GPL-2.
kalign 2.04 February 25, 2009 KALIGN(1)