Thank you for yor assistance, I finally get the code and and since I have various files on my directory. With a for loop It can work on all my directory. Here is the code :
<<
Code:
for filename in ERR*_orfm.fna.*.test ; do
last_seq=$(awk '{print $1}' $filename | tail -n1)
seqname=$(basename $filename .test)
outname="$seqname".first_out
echo "cat $seqname | sed -e "1,/$last_seq/ d" | sed -ne '/^>/,$ p' > $outname"
done
>>
Regards
Moderator's Comments:
SERIOUSLY: Please use CODE tags as required by forum rules! You received an infraction for repeatedly ignoring polite requests to do so.
Last edited by RudiC; 06-07-2018 at 11:49 AM..
Reason: Added CODE tags.
Hello
when I try to run rm on multiple files I have problem to delete files with space.
I have this command :
find . -name "*.cmd" | xargs \rm -f
it doing the work fine but when it comes across files with spaces like : "my foo file.cmd"
it refuse to delete it
why? (1 Reply)
I'm trying some thing like this. But not working
It worked for bash files
Now I want some thing like that along with multiple input files by redirecting their outputs as inputs of next command like below
Could you guyz p0lz help me on this
#!/usr/bin/awk -f
BEGIN
{
}
script1a.awk... (2 Replies)
Hi,
I need help to split lines from a file into multiple files.
my input look like this:
13
23 45 45 6 7
33 44 55 66 7
13
34 5 6 7 87
45 7 8 8 9
13
44 55 66 77 8
44 66 88 99 6
I want to split every 3 lines from this file to be written to individual files. (3 Replies)
Hi guys,
say I have a few files in a directory (58 text files or somthing)
each one contains mulitple strings that I wish to replace with other strings
so in these 58 files I'm looking for say the following strings:
JAM (replace with BUTTER)
BREAD (replace with CRACKER)
SCOOP (replace... (19 Replies)
Hi,
I'd like to process multiple files. For example:
file1.txt
file2.txt
file3.txt
Each file contains several lines of data. I want to extract a piece of data and output it to a new file.
file1.txt ----> newfile1.txt
file2.txt ----> newfile2.txt
file3.txt ----> newfile3.txt
Here is... (3 Replies)
hi,
I have a directory "test" under which there are 3 files a.txt,b.txt and c.txt.
I need to rename those files to a.pl,b.pl and c.pl respectively.
is it possible to achieve this in a sed or awk one liner?
i have searched but many of them are scripts.
I need to do this in a one liner.
I... (2 Replies)
Hi everyone,
I'm new to the forums, as you can probably tell... I'm also pretty new to scripting and writing any type of code.
I needed to know exactly how I can grep for multiple strings, in files located in one directory, but I need each string to output to a separate file.
So I'd... (19 Replies)
How can I run the following command on multiple files and print out the corresponding multiple files.
perl script.pl genome.gff 1.txt > 1.gff
However, there are multiples files of 1.txt, from 1----100.txt
Thank you so much.
No duplicate posting! Continue here. (0 Replies)
How can I Run one script on multiple files and print out multiple files.
FOR EXAMPLE
i want to run script.pl on 100 files named 1.txt ....100.txt under same directory and print out corresponding file 1.gff ....100.gff.THANKS (4 Replies)
Dear folks
I have two data set which there names are "final.map" and "1.geno" and look like this structures:
final.map:
gi|358485511|ref|NC_006088.3| 2044
gi|358485511|ref|NC_006088.3| 2048
gi|358485511|ref|NC_006088.3| 2187
gi|358485511|ref|NC_006088.3| 17654
... (2 Replies)
Discussion started by: sajmar
2 Replies
LEARN ABOUT LINUX
svnpath
SVNPATH(1)SVNPATH(1)NAME
svnpath - output svn url with support for tags and branches
SYNOPSIS
svnpath
svnpath tags
svnpath branches
svnpath trunk
DESCRIPTION
svnpath is intended to be run in a Subversion working copy.
In its simplest usage, svnpath with no parameters outputs the svn url for the repository associated with the working copy.
If a parameter is given, svnpath attempts to instead output the url that would be used for the tags, branches, or trunk. This will only
work if it's run in the top-level directory that is subject to tagging or branching.
For example, if you want to tag what's checked into Subversion as version 1.0, you could use a command like this:
svn cp $(svnpath) $(svnpath tags)/1.0
That's much easier than using svn info to look up the repository url and manually modifying it to derive the url to use for the tag, and
typing in something like this:
svn cp svn+ssh://my.server.example/svn/project/trunk svn+ssh://my.server.example/svn/project/tags/1.0
svnpath uses a simple heuristic to convert between the trunk, tags, and branches paths. It replaces the first occurrence of trunk, tags, or
branches with the name of what you're looking for. This will work ok for most typical Subversion repository layouts.
If you have an atypical layout and it does not work, you can add a ~/.svnpath file. This file is perl code, which can modify the path in
$url. For example, the author uses this file:
#!/usr/bin/perl
# svnpath personal override file
# For d-i I sometimes work from a full d-i tree branch. Remove that from
# the path to get regular tags or branches directories.
$url=~s!d-i/(rc|beta)[0-9]+/!!;
$url=~s!d-i/sarge/!!;
1
LICENSE
GPL version 2 or later
AUTHOR
Joey Hess <joey@kitenet.net>
Debian Utilities 2013-12-23 SVNPATH(1)
06-07-2018
