Thank you for yor assistance, I finally get the code and and since I have various files on my directory. With a for loop It can work on all my directory. Here is the code :
<<
Code:
for filename in ERR*_orfm.fna.*.test ; do
last_seq=$(awk '{print $1}' $filename | tail -n1)
seqname=$(basename $filename .test)
outname="$seqname".first_out
echo "cat $seqname | sed -e "1,/$last_seq/ d" | sed -ne '/^>/,$ p' > $outname"
done
>>
Regards
Moderator's Comments:
SERIOUSLY: Please use CODE tags as required by forum rules! You received an infraction for repeatedly ignoring polite requests to do so.
Last edited by RudiC; 06-07-2018 at 11:49 AM..
Reason: Added CODE tags.
Hello
when I try to run rm on multiple files I have problem to delete files with space.
I have this command :
find . -name "*.cmd" | xargs \rm -f
it doing the work fine but when it comes across files with spaces like : "my foo file.cmd"
it refuse to delete it
why? (1 Reply)
I'm trying some thing like this. But not working
It worked for bash files
Now I want some thing like that along with multiple input files by redirecting their outputs as inputs of next command like below
Could you guyz p0lz help me on this
#!/usr/bin/awk -f
BEGIN
{
}
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13
23 45 45 6 7
33 44 55 66 7
13
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45 7 8 8 9
13
44 55 66 77 8
44 66 88 99 6
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Hi guys,
say I have a few files in a directory (58 text files or somthing)
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i have searched but many of them are scripts.
I need to do this in a one liner.
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Hi everyone,
I'm new to the forums, as you can probably tell... I'm also pretty new to scripting and writing any type of code.
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How can I run the following command on multiple files and print out the corresponding multiple files.
perl script.pl genome.gff 1.txt > 1.gff
However, there are multiples files of 1.txt, from 1----100.txt
Thank you so much.
No duplicate posting! Continue here. (0 Replies)
How can I Run one script on multiple files and print out multiple files.
FOR EXAMPLE
i want to run script.pl on 100 files named 1.txt ....100.txt under same directory and print out corresponding file 1.gff ....100.gff.THANKS (4 Replies)
Dear folks
I have two data set which there names are "final.map" and "1.geno" and look like this structures:
final.map:
gi|358485511|ref|NC_006088.3| 2044
gi|358485511|ref|NC_006088.3| 2048
gi|358485511|ref|NC_006088.3| 2187
gi|358485511|ref|NC_006088.3| 17654
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Discussion started by: sajmar
2 Replies
LEARN ABOUT PLAN9
split
SPLIT(1) General Commands Manual SPLIT(1)NAME
split - split a file into pieces
SYNOPSIS
split [ option ... ] [ file ]
DESCRIPTION
Split reads file (standard input by default) and writes it in pieces of 1000 lines per output file. The names of the output files are xaa,
xab, and so on to xzz. The options are
-n Split into n-line pieces.
-e expression
File divisions occur at each line that matches a regular expression; see regexp(6). Multiple -e options may appear. If a subex-
pression of expression is contained in parentheses (...), the output file name is the portion of the line which matches the subex-
pression.
-f stem
Use stem instead of x in output file names.
-s suffix
Append suffix to names identified under -e.
-x Exclude the matched input line from the output file.
-i Ignore case in option -e; force output file names (excluding the suffix) to lower case.
SOURCE
/sys/src/cmd/split.c
SEE ALSO sed(1), awk(1)grep(1), regexp(6)SPLIT(1)
06-07-2018
