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Top Forums Programming Run sed and awk in multiple files in adirectory Post 303018448 by MadeInGermany on Wednesday 6th of June 2018 11:58:03 AM
Old 06-06-2018
Apparently
1.
Code:
sed -n '1,/ERR598955.712540_97_1_3/d; /^>/,$p' ERR598955_orfm.fna.2.test

has an empty output, while your initial
2.
Code:
cat ERR598955_orfm.fna.1 | sed -e '1,/ERR598955.7664144_89_2_3/ d' | sed -ne '/^>/,$ p'

works?
Does
3.
Code:
cat ERR598955_orfm.fna.2.test | sed -e '1,/ERR598955.712540_97_1_3/ d' | sed -ne '/^>/,$ p'

work?
I do not see a functional difference between 1. and 3.
Could you post the ERR598955_orfm.fna.2.test? (if too long, only the relevant part, AND WRAP IT IN CODE TAGS for readability, or attach the file in the Advanced Editor).
 

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IGAWK(1)							 Utility Commands							  IGAWK(1)

NAME
igawk - gawk with include files SYNOPSIS
igawk [ all gawk options ] -f program-file [ -- ] file ... igawk [ all gawk options ] [ -- ] program-text file ... DESCRIPTION
Igawk is a simple shell script that adds the ability to have ``include files'' to gawk(1). AWK programs for igawk are the same as for gawk, except that, in addition, you may have lines like @include getopt.awk in your program to include the file getopt.awk from either the current directory or one of the other directories in the search path. OPTIONS
See gawk(1) for a full description of the AWK language and the options that gawk supports. EXAMPLES
cat << EOF > test.awk @include getopt.awk BEGIN { while (getopt(ARGC, ARGV, "am:q") != -1) ... } EOF igawk -f test.awk SEE ALSO
gawk(1) Effective AWK Programming, Edition 1.0, published by the Free Software Foundation, 1995. AUTHOR
Arnold Robbins (arnold@skeeve.com). ATTRIBUTES
See attributes(5) for descriptions of the following attributes: +--------------------+-----------------+ | ATTRIBUTE TYPE | ATTRIBUTE VALUE | +--------------------+-----------------+ |Availability | SUNWgawk | +--------------------+-----------------+ |Interface Stability | Volatile | +--------------------+-----------------+ NOTES
Source for gawk is available on http://opensolaris.org. Free Software Foundation Nov 3 1999 IGAWK(1)
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