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Full Discussion: Run sed and awk in multiple files in adirectory
Top Forums Programming Run sed and awk in multiple files in adirectory Post 303018347 by MadeInGermany on Monday 4th of June 2018 11:15:31 AM
Old 06-04-2018
Proposal: a bash script with a for loop
Code:
#!/bin/bash
fmask="ERR598955_orfm.fna"
for f in $fmask.*
do
  [ -f "$f" ] || continue # ensure this is an existing file
  ext=${f#$fmask} # strip off the leading fmask
  pattern=$(awk '{print $1; exit}' "$f") # pattern is the 1st word in the 1st line
  sed -n '1,/^'"${pattern}"'$/ d ; /^>/,$ p' "$f" > "first_out.$ext"
done

You might need to work on it...
This User Gave Thanks to MadeInGermany For This Post:
Dieunel
 

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LEARN ABOUT SUNOS

gst-complete-0.8

gst-complete-0.8(1)						   User Commands					       gst-complete-0.8(1)

NAME

       gst-complete-0.8, gst-complete - perform bash completion for gst-launch command lines

SYNOPSIS

       complete -Cgst-complete-0.8 gst-launch

       gst-complete [--gst-list-mm] [--gst-mm=string] [--print]

DESCRIPTION

       gst-complete-0.8 enables bash to provide context-sensitive tab completion for gst-launch command lines. See gst-launch(1) for the syntax of
       gst-launch command lines.

       You must have a version of bash that supports programmable completion. Such versions of bash provide the complete built-in command.

       gst-complete is a wrapper script that runs the latest installed version of gst-complete-X.X. For example, if both gst-complete-0.7 and gst-
       complete-0.8 are installed on your system, gst-complete runs gst-complete-0.8.

OPTIONS

       The following options are supported by gst-complete-0.8 and gst-complete:

       --help	       Display detailed usage message. You can also use -? to specify this option.

       The following options are supported by gst-complete only:

       --gst-list-mm   List found major/minor versions. This option displays the versions that are available.

       --gst-mm=string Force  major/minor  version.  This  option  enables you to specify a specific version to run, if you do not want to run the
		       default version.

       --print	       Print wrapped command line. This option displays the command that will be run, and then runs the command.

EXAMPLES

       Example 1: Generating the Registry of Available Plugins by Running gst-compprep

       Run the following command in your .bash_profile or other appropriate place:

       example% complete -C gst-complete-0.8 gst-launch

       Example 2: Running the Wrapper Script and Displaying the Command Name

       example% gst-complete --print
       /usr/bin/gst-complete-0.8

FILES

       The following files are used by this application:

       /usr/bin/gst-complete-0.Executable for bash completion for gst-launch

       /usr/bin/gst-complete   Wrapper script that runs the latest installed version of gst-complete-X.X

ATTRIBUTES

       See attributes(5) for descriptions of the following attributes:

       +-----------------------------+-----------------------------+
       |      ATTRIBUTE TYPE	     |	    ATTRIBUTE VALUE	   |
       +-----------------------------+-----------------------------+
       |Availability		     |SUNWgnome-media		   |
       +-----------------------------+-----------------------------+
       |Interface stability	     |External			   |
       +-----------------------------+-----------------------------+

SEE ALSO

       gst-compprep(1), gst-feedback(1), gst-inspect(1), gst-launch(1), gst-launch-ext(1), gst-md5sum(1), gst-register(1), gst-thumbnail(1),  gst-
       typefind(1), gst-xmlinspect(1), gst-xmllaunch(1), gstreamer-properties(1), libgstreamer-0.8(3), libgstgetbits(3)

NOTES

       Original man page written by the GStreamer team at http://gstreamer.net/.

       Updated by Brian Cameron, Sun Microsystems Inc., 2004.

SunOS 5.10							    14 Oct 2004 					       gst-complete-0.8(1)
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