Hi all,
I have a file with single white space delimited values, I want to convert them to a tab delimited file.
I tried sed, tr ... but nothing is working.
Thanks,
Rajeevan D (16 Replies)
Hi
I have 100 files each with only one column of 10 numbers that I wish to add to a new file so that I get 100 columns collected in one tab delimited file.
I tried something like:
foreach num (1 2 3)
foreach? gawk -F '\t' '{$num=$1}1' OFS='\t' Eu9_10.2patienter/pospep_10.2patient$num >>... (5 Replies)
Hi Forum
I have a tab delimited file that opens well in Openoffice calc (excel). But when I perform any operation in command line, it reads the file incorrectly. When I 'save As' the same file in office as tab delimited then it works fine.
The file that I think is tab delimited is actually... (8 Replies)
I have a file which was pipe delimited, I need to make it tab delimited. I tried with sed but no use
cat file | sed 's/|//t/g'
The above command substituted "/t" not tab in the place of pipe.
Sample file:
abc|123|2012-01-30|2012-04-28|xyz
have to convert to:
abc 123... (6 Replies)
Hi How to make tab delimited file to space delimited?
in put file:
ABC kgy
jkh ghj
ash kjl
o/p file:
ABC kgy
jkh ghj
ash kjl
Use code tags, thanks. (1 Reply)
Hi,
I need urgent help with a tab delimited file I am working on.
This is the file :
TTTT|YYYYYYY|jargon-journal|MP0000000UID||"j1, j2, j3"
I need th following output:
TTTT|YYYYYYY|jargon-journal|MP0000000UID||ji
TTTT|YYYYYYY|jargon-journal|MP0000000UID||j2... (8 Replies)
Hi, I have a rquirement in unix as below .
I have a text file with me seperated by | symbol and i need to generate a excel file through unix commands/script so that each value will go to each column.
ex:
Input Text file:
1|A|apple
2|B|bottle
excel file to be generated as output as... (9 Replies)
Hi,
I have requirement to create tab delimited file with values coming from variables.
File will contain only two columns separated by tab.
Header will be added once.
Values will be keep adding upon the script run.
If values already exists then values will be replaced.
I have done so... (1 Reply)
Hello Everyone..
I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files
FileP.txt
... (2 Replies)
Discussion started by: YogeshG
2 Replies
LEARN ABOUT DEBIAN
bio::graphics::glyph::wiggle_density
Bio::Graphics::Glyph::wiggle_density(3pm) User Contributed Perl Documentation Bio::Graphics::Glyph::wiggle_density(3pm)NAME
Bio::Graphics::Glyph::wiggle_density - A density plot compatible with dense "wig"data
SYNOPSIS
See <Bio::Graphics::Panel> and <Bio::Graphics::Glyph>.
DESCRIPTION
This glyph works like the regular density but takes value data in Bio::Graphics::Wiggle file format:
reference = chr1
ChipCHIP Feature1 1..10000 wigfile=./test.wig;wigstart=0
ChipCHIP Feature2 10001..20000 wigfile=./test.wig;wigstart=656
ChipCHIP Feature3 25001..35000 wigfile=./test.wig;wigstart=1312
The "wigfile" attribute gives a relative or absolute pathname to a Bio::Graphics::Wiggle format file. The optional "wigstart" option gives
the offset to the start of the data. If not specified, a linear search will be used to find the data. The data consist of a packed binary
representation of the values in the feature, using a constant step such as present in tiling array data.
OPTIONS
The same as the regular graded_segments glyph, except that the following options are recognized:
Name Value Description
--------------------
basedir path Path to be used to resolve "wigfile" and "densefile"
tags giving relative paths. Default is to use the
current working directory. Absolute wigfile &
densefile paths will not be changed.
autoscale "local" or "global"
If one or more of min_score and max_score options
are absent, then these values will be calculated
automatically. The "autoscale" option controls how
the calculation is done. The "local" value will
scale values according to the minimum and maximum
values present in the window being graphed. "global"
will use chromosome-wide statistics for the entire
wiggle or dense file to find min and max values.
smoothing method name Smoothing method: one of "mean", "max", "min" or "none"
smoothing_window
integer Number of values across which data should be smoothed.
bicolor_pivot
name Where to pivot the two colors when drawing bicolor plots.
Options are "mean" and "zero". A numeric value can
also be provided.
pos_color color When drawing bicolor plots, the fill color to use for values
that are above the pivot point.
neg_color color When drawing bicolor plots, the fill color to use for values
that are below the pivot point.
SPECIAL FEATURE TAGS
The glyph expects one or more of the following tags (attributes) in feature it renders:
Name Value Description
--------------------
wigfile path name Path to the Bio::Graphics::Wiggle file for vales.
(required)
densefile path name Path to a Bio::Graphics::DenseFeature object
(deprecated)
denseoffset integer Integer offset to where the data begins in the
Bio::Graphics::DenseFeature file (deprecated)
densesize integer Integer size of the data in the Bio::Graphics::DenseFeature
file (deprecated)
BUGS
Please report them.
SEE ALSO
Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds, Bio::Graphics::Glyph::crossbox,
Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna, Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse,
Bio::Graphics::Glyph::extending_arrow, Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line, Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers,
Bio::Graphics::Glyph::rndrect, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany,
Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation, Bio::Graphics::Glyph::allele_tower,
Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD
AUTHOR
Lincoln Stein <steinl@cshl.edu>.
Copyright (c) 2007 Cold Spring Harbor Laboratory
This package and its accompanying libraries is free software; you can redistribute it and/or modify it under the terms of the GPL (either
version 1, or at your option, any later version) or the Artistic License 2.0. Refer to LICENSE for the full license text. In addition,
please see DISCLAIMER.txt for disclaimers of warranty.
perl v5.14.2 2012-02-20 Bio::Graphics::Glyph::wiggle_density(3pm)
04-28-2018
