Sponsored Content
Top Forums UNIX for Beginners Questions & Answers UNIX - 2 tab delimited files, conditional column extraction Post 303014977 by Scrutinizer on Sunday 25th of March 2018 02:38:47 AM
Old 03-25-2018
Hi, see if this works:
Code:
awk -F'\t' '
  NR==FNR {
    if(!($1 in L))
      L[$1]=$2
    R[$1]=$3
    next
  }
  {
    print ($2>=L[$1] && $2<R[$1])?$4:"NA"
  }
' file1 file2

This User Gave Thanks to Scrutinizer For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Delete first column in tab-delimited text-file

I have a large text-file with tab-delimited genetic data that looks like: KSC112 KSC234 0 0 1 1 A G C T I simply wan to delete the first column, but since the file has 600 000 columns, it is not possible with awk (seems to be limited at 32k columns). Does anyone have an idea how to do this? (2 Replies)
Discussion started by: andmal
2 Replies

2. UNIX for Dummies Questions & Answers

Add a new column to a tab delimited text file

I want to add a new column to a tab delimited text file. It will be the first column and it will just be 1's. How do I go about doing that? Thanks! (1 Reply)
Discussion started by: evelibertine
1 Replies

3. Shell Programming and Scripting

Using sed on 1st column of tab delimited file

Hi all, I'm new to Unix and work primarily in bioinformatics. I am in need of a script which will allow me to replace "1" with "chr1" in only the first column of a file which looks like such: 1 10327 rs112750067 T C . PASS ASP;RSPOS=10327;... (4 Replies)
Discussion started by: Hkins552
4 Replies

4. UNIX for Dummies Questions & Answers

Using awk to log transform a column in a tab-delimited text file?

How do I use awk to log transform the fifth column of a tab-delimited text file? Thanks! (1 Reply)
Discussion started by: evelibertine
1 Replies

5. Shell Programming and Scripting

Extract second column tab delimited file

I have a file which looks like this: 73450 articles and news developmental psychology 2006-03-30 16:22:40 1 http://www.usnews.com 73450 articles and news developmental psychology 2006-03-30 16:22:40 2 http://www.apa.org 73450 articles and news developmental psychology 2006-03-30... (1 Reply)
Discussion started by: shoaibjameel123
1 Replies

6. UNIX for Dummies Questions & Answers

add (append) a column in a tab delimited file

I have a file having the following entries: test1 test2 test3 11 22 33 22 44 66 99 99 44 --- I want to add a column so that the above file becomes: test1 test2 test3 notest 11 22 33 * 22 44 66 * 99 99 44 * --- Thanks (6 Replies)
Discussion started by: mary271
6 Replies

7. Shell Programming and Scripting

Convert a 3 column tab delimited file to a matrix

Hi all, I have a 3 columns input file like this: CPLX9PC-4943 CPLX9PC-4943 1 CPLX9PC-4943 CpxID123 0 CPLX9PC-4943 CpxID126 0 CPLX9PC-4943 CPLX9PC-5763 0.5 CPLX9PC-4943 CpxID13 0 CPLX9PC-4943 CPLX9PC-6163 0 CPLX9PC-4943 CPLX9PC-6164 0.04... (7 Replies)
Discussion started by: AshwaniSharma09
7 Replies

8. Shell Programming and Scripting

Delete an entire column from a tab delimited file

Hi, Can anyone please tell me about how we can delete an entire column from a tab delimited file? Mu input_file.txt looks like this: And I want the output as: I used the below code nawk -v d="1" 'BEGIN{FS=OFS="\t"}{$d=""}{print}' input_file.txtBut in the output, the first column is... (5 Replies)
Discussion started by: sampoorna
5 Replies

9. UNIX for Dummies Questions & Answers

awk - Extract 4 lines in Column to Rows Tab Delimited between tags

I have tried the following to no avail. xargs -n8 < test.txt awk '{if(NR%6!=0){p=""}else{p="\n"};printf $0" "p}' Mod_Alm_log.txt > test.txt I have tried different variations of the above, the problem is mixes lines together. And it includes the tags "%a and %A" I need them to be all tab... (16 Replies)
Discussion started by: mytouchsr
16 Replies

10. UNIX for Beginners Questions & Answers

Replace a column in tab delimited file with column in other tab delimited file,based on match

Hello Everyone.. I want to replace the retail col from FileI with cstp1 col from FileP if the strpno matches in both files FileP.txt ... (2 Replies)
Discussion started by: YogeshG
2 Replies
OHCOUNT(1)							   User Commands							OHCOUNT(1)

NAME
ohcount - manual page for ohcount 3.0.0 SYNOPSIS
ohcount [option] [paths...] DESCRIPTION
Ohloh source code line counter command line tool. http://www.ohloh.net/ [option] can be one of the following: -a, --annotate -d, --detect -h, --help -i, --individual -l, --license -re -s, --summary -a, --annotate Show annotated source code The contents of all source code files found within the given paths will be emitted to stdout. Each line will be prefixed with a tab-delimited language name and semantic categorization (code, comment, or blank). -d, --detect Find source code files Recursively find all source code files within the given paths. For each source code file found, the file name will be emitted to stdout prefixed with a tab-delimited language name. -h, --help Display this message -i, --individual Count lines of code per file Count lines in all source code files within the given paths, and emit a report of the lines of code, comments, and blanks in each language per file. -l, --license Displays detected licensing information contained in each source code file. -re Prints raw entity information to the screen (mainly for debugging). -s, --summary Count lines of code (default) Count lines in all source code files within the given paths, and emit a report of the total number of lines of code, comments, and blanks in each language. This is the default action. [paths] can refer to any number of individual files or directories. Directories will be probed recursively. If no path is given, the current directory will be used. ohcount 3.0.0 September 2011 OHCOUNT(1)
All times are GMT -4. The time now is 04:59 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy