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Top Forums Shell Programming and Scripting Problem getting sed to work with variables Post 303013809 by MadeInGermany on Wednesday 28th of February 2018 04:12:15 PM
Old 02-28-2018
Your #1 problem is that your output file is overwritten by each loop cycle, so will only contain the last sed output.
Your #2 problem is that [ ] are RE-special characters.
(While the ( ) are only special in ERE not RE).
--
I think my solution does what you intended.
Code:
#!/bin/bash
# in each given base file check for duplicate names
for base_file
do
 awk '                                  
  BEGIN { FS=OFS="\t" }
# process the base_file and count the dups, +1 if a dup was met
  NR==FNR { if (dup[$2]++==1) dup[$2]++; next }
# process the base_file again, if a dup then add a dup_#_ prefix
  dup[$2]>1 { $2=("dup_" --dup[$2]-1 "_" $2) }
  { print }
 ' "$base_file" "$base_file" > revised_"$base_file"
done


Last edited by MadeInGermany; 02-28-2018 at 05:55 PM.. Reason: added a loop over the arguments
This User Gave Thanks to MadeInGermany For This Post:
 

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dup(2)								System Calls Manual							    dup(2)

Name
       dup, dup2 - duplicate an open file descriptor

Syntax
       newd = dup(oldd)
       int newd, oldd;

       dup2(oldd, newd)
       int oldd, newd;

Description
       The  system  call  duplicates  an  existing  object descriptor.	The argument oldd is a small non-negative integer index in the per-process
       descriptor table.  The value must be less than the size of the table, which is returned by The new descriptor, newd, returned by  the  call
       is the lowest numbered descriptor that is not currently in use by the process.

       The object referenced by the descriptor does not distinguish between references using oldd and newd in any way.	Thus, if newd and oldd are
       duplicate references to an open file, and calls all move a single pointer into the file.  If a separate pointer into the file is desired, a
       different object reference to the file must be obtained by issuing an additional call.

       In the second form of the call, specify the value of newd needed. If this descriptor is already in use, the descriptor is first deallocated
       as if a call had been done.

Return Values
       The value -1 is returned if an error occurs in either call.  The external variable errno indicates the cause of the error.

Diagnostics
       The and system calls fail under the following conditions:

       [EBADF]	      The oldd or newd is not a valid active descriptor.

       [EMFILE]       Too many descriptors are active.

       [EINTR]	      The or function was terminated prematurely by a signal.

See Also
       accept(2), close(2), getdtablesize(2), lseek(2), open(2), pipe(2), read(2), socket(2), socketpair(2), write(2)

																	    dup(2)
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