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Full Discussion: Running program and output files in specific directories
Top Forums Shell Programming and Scripting Running program and output files in specific directories Post 303013238 by kristinu on Sunday 18th of February 2018 01:07:54 PM
Old 02-18-2018
Seed Format
You pass it a list of files in seed format (Standard for the Exchange of Earthquake Data)
and outputs a set of files in sac format (a format used by the Seismic Analysis Code SAC).

For example, running mseed2sac as follows
mseed2sac iv/cagr/hhz.d/iv.cagr..hhz.d.2016.208

The program then creates a number of files (in the directory where mseed2sac is run)
as shown in the list below. I want then to move to a new directory, for example to
`iv.sac/cagr/hhz.d/`

.d means day. So for 2016.208 means file for day 208.

Code:
iv.cagr..hhz.d.2016.208.000001.sac  iv.cagr..hhz.d.2016.208.043041.sac  iv.cagr..hhz.d.2016.208.070027.sac  iv.cagr..hhz.d.2016.208.121238.sac
iv.cagr..hhz.d.2016.208.131218.sac  iv.cagr..hhz.d.2016.208.132855.sac  iv.cagr..hhz.d.2016.208.132938.sac  iv.cagr..hhz.d.2016.208.133025.sac
iv.cagr..hhz.d.2016.208.133143.sac  iv.cagr..hhz.d.2016.208.133225.sac  iv.cagr..hhz.d.2016.208.133324.sac  iv.cagr..hhz.d.2016.208.133329.sac
iv.cagr..hhz.d.2016.208.133416.sac  iv.cagr..hhz.d.2016.208.133444.sac  iv.cagr..hhz.d.2016.208.133516.sac  iv.cagr..hhz.d.2016.208.133554.sac
iv.cagr..hhz.d.2016.208.133558.sac  iv.cagr..hhz.d.2016.208.133735.sac  iv.cagr..hhz.d.2016.208.133908.sac  iv.cagr..hhz.d.2016.208.133923.sac
iv.cagr..hhz.d.2016.208.134135.sac  iv.cagr..hhz.d.2016.208.134323.sac  iv.cagr..hhz.d.2016.208.134343.sac  iv.cagr..hhz.d.2016.208.134437.sac
iv.cagr..hhz.d.2016.208.134514.sac  iv.cagr..hhz.d.2016.208.134536.sac  iv.cagr..hhz.d.2016.208.134716.sac  iv.cagr..hhz.d.2016.208.134943.sac
iv.cagr..hhz.d.2016.208.135034.sac  iv.cagr..hhz.d.2016.208.135144.sac  iv.cagr..hhz.d.2016.208.135243.sac  iv.cagr..hhz.d.2016.208.135323.sac
iv.cagr..hhz.d.2016.208.135423.sac  iv.cagr..hhz.d.2016.208.135443.sac  iv.cagr..hhz.d.2016.208.135523.sac  iv.cagr..hhz.d.2016.208.135536.sac
iv.cagr..hhz.d.2016.208.135543.sac  iv.cagr..hhz.d.2016.208.135643.sac  iv.cagr..hhz.d.2016.208.135723.sac  iv.cagr..hhz.d.2016.208.135834.sac
iv.cagr..hhz.d.2016.208.135916.sac  iv.cagr..hhz.d.2016.208.140033.sac  iv.cagr..hhz.d.2016.208.140136.sac  iv.cagr..hhz.d.2016.208.140237.sac
iv.cagr..hhz.d.2016.208.140305.sac  iv.cagr..hhz.d.2016.208.140337.sac  iv.cagr..hhz.d.2016.208.140356.sac  iv.cagr..hhz.d.2016.208.140456.sac
iv.cagr..hhz.d.2016.208.140525.sac  iv.cagr..hhz.d.2016.208.140703.sac  iv.cagr..hhz.d.2016.208.140727.sac  iv.cagr..hhz.d.2016.208.140813.sac
iv.cagr..hhz.d.2016.208.140924.sac  iv.cagr..hhz.d.2016.208.140943.sac  iv.cagr..hhz.d.2016.208.141043.sac  iv.cagr..hhz.d.2016.208.141106.sac
iv.cagr..hhz.d.2016.208.141123.sac  iv.cagr..hhz.d.2016.208.141157.sac  iv.cagr..hhz.d.2016.208.141233.sac  iv.cagr..hhz.d.2016.208.141344.sac
iv.cagr..hhz.d.2016.208.141737.sac  iv.cagr..hhz.d.2016.208.141743.sac  iv.cagr..hhz.d.2016.208.141756.sac  iv.cagr..hhz.d.2016.208.141933.sac
iv.cagr..hhz.d.2016.208.141944.sac  iv.cagr..hhz.d.2016.208.142038.sac  iv.cagr..hhz.d.2016.208.142135.sac  iv.cagr..hhz.d.2016.208.142138.sac
iv.cagr..hhz.d.2016.208.142223.sac  iv.cagr..hhz.d.2016.208.142457.sac  iv.cagr..hhz.d.2016.208.142517.sac  iv.cagr..hhz.d.2016.208.142537.sac
iv.cagr..hhz.d.2016.208.142543.sac  iv.cagr..hhz.d.2016.208.142637.sac  iv.cagr..hhz.d.2016.208.142716.sac  iv.cagr..hhz.d.2016.208.142736.sac
iv.cagr..hhz.d.2016.208.142838.sac  iv.cagr..hhz.d.2016.208.142938.sac  iv.cagr..hhz.d.2016.208.142944.sac  iv.cagr..hhz.d.2016.208.143035.sac
iv.cagr..hhz.d.2016.208.143137.sac  iv.cagr..hhz.d.2016.208.143224.sac  iv.cagr..hhz.d.2016.208.144159.sac  iv.cagr..hhz.d.2016.208.144215.sac
iv.cagr..hhz.d.2016.208.144324.sac  iv.cagr..hhz.d.2016.208.144337.sac  iv.cagr..hhz.d.2016.208.144355.sac  iv.cagr..hhz.d.2016.208.144446.sac
iv.cagr..hhz.d.2016.208.144537.sac  iv.cagr..hhz.d.2016.208.144743.sac  iv.cagr..hhz.d.2016.208.144845.sac  iv.cagr..hhz.d.2016.208.144956.sac
iv.cagr..hhz.d.2016.208.145137.sac  iv.cagr..hhz.d.2016.208.145337.sac  iv.cagr..hhz.d.2016.208.145355.sac  iv.cagr..hhz.d.2016.208.145443.sac
iv.cagr..hhz.d.2016.208.145537.sac  iv.cagr..hhz.d.2016.208.145553.sac  iv.cagr..hhz.d.2016.208.145715.sac  iv.cagr..hhz.d.2016.208.145757.sac
iv.cagr..hhz.d.2016.208.150043.sac  iv.cagr..hhz.d.2016.208.150143.sac  iv.cagr..hhz.d.2016.208.150236.sac  iv.cagr..hhz.d.2016.208.150344.sac
iv.cagr..hhz.d.2016.208.150454.sac  iv.cagr..hhz.d.2016.208.150544.sac  iv.cagr..hhz.d.2016.208.150736.sac  iv.cagr..hhz.d.2016.208.150826.sac
iv.cagr..hhz.d.2016.208.151114.sac  iv.cagr..hhz.d.2016.208.151206.sac  iv.cagr..hhz.d.2016.208.151354.sac  iv.cagr..hhz.d.2016.208.151445.sac
iv.cagr..hhz.d.2016.208.151605.sac  iv.cagr..hhz.d.2016.208.151623.sac  iv.cagr..hhz.d.2016.208.151837.sac  iv.cagr..hhz.d.2016.208.152444.sac
iv.cagr..hhz.d.2016.208.153233.sac  iv.cagr..hhz.d.2016.208.153738.sac  iv.cagr..hhz.d.2016.208.154623.sac  iv.cagr..hhz.d.2016.208.155053.sac
iv.cagr..hhz.d.2016.208.155145.sac  iv.cagr..hhz.d.2016.208.155733.sac  iv.cagr..hhz.d.2016.208.155745.sac  iv.cagr..hhz.d.2016.208.155853.sac
iv.cagr..hhz.d.2016.208.155937.sac  iv.cagr..hhz.d.2016.208.161544.sac  iv.cagr..hhz.d.2016.208.164058.sac  iv.cagr..hhz.d.2016.208.164637.sac
iv.cagr..hhz.d.2016.208.164705.sac  iv.cagr..hhz.d.2016.208.164726.sac  iv.cagr..hhz.d.2016.208.165706.sac  iv.cagr..hhz.d.2016.208.171016.sac
iv.cagr..hhz.d.2016.208.171135.sac  iv.cagr..hhz.d.2016.208.171513.sac  iv.cagr..hhz.d.2016.208.171556.sac  iv.cagr..hhz.d.2016.208.171723.sac
iv.cagr..hhz.d.2016.208.172005.sac  iv.cagr..hhz.d.2016.208.172044.sac  iv.cagr..hhz.d.2016.208.172438.sac  iv.cagr..hhz.d.2016.208.180648.sac
iv.cagr..hhz.d.2016.208.192841.sac

---------- Post updated at 01:07 PM ---------- Previous update was at 11:26 AM ----------

Now I have updated the code as follows which transfer the generated files
to the correct directory. Any improvements or possible problems with my
code would be very welcome.

Code:
# Counts the number of files to process
totfcn=$(find . -type f | tee /tmp/wrk | wc -l)

i=0; j=0
while read fn; do    
  printf -v XXX "%0*d" $((60 * ++i / totfcn))
  printf "\r[%-60s]" "${XXX//0/*}"
  printf "%4d%%" $((100 * ++j / totfcn))
  #${dir_mseed2sac}/mseed2sac $fn
done < /tmp/wrk
printf "\n"

while read fn; do    
  #${dir_mseed2sac}/mseed2sac $fn
  dir=$(dirname "$fn")  # Gets directory path
  fnm=$(basename "$fn") # Gets filename excl. path
  rgx_nwk="s/${nwk}/${nwk}.sac/g"
  odir_nwk=`echo "$dir" | sed -e $rgx_nwk`
  ofl_nwk="${odir_nwk}/${fnm}"

  echo "fn: $fn"
  if [ -d "$odir_nwk" ]; then
    echo "Directory already exists: $odir_nwk"
  else
    echo "+ dir: $dir"
    echo "+ fnm: $fnm"
    echo "+ mkdir -p $odir_nwk"
  fi
  echo "+ mv ${fnm}.* ${odir_nwk}/"
done < /tmp/wrk

Last edited by kristinu; 02-18-2018 at 02:33 PM..
 

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