Sponsored Content
Top Forums Shell Programming and Scripting awk to print text in field if match and range is met Post 303013129 by cmccabe on Thursday 15th of February 2018 12:46:20 PM
Old 02-15-2018
Code:
if[A] ~ array)

is ensuring, or is supposed to, match $4 in file1 with the array split from file2. So using the first value RPS19 as an example, only those lines in file2 with RPS19 are used. Thank you Smilie.
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Grep range of lines to print a line number on match

Hi Guru's, I am trying to grep a range of line numbers (based on match) and then look for another match which starts with a special character '$' and print the line number. I have the below code but it is actually printing the line number counting starting from the first line of the range i am... (15 Replies)
Discussion started by: Kevin Tivoli
15 Replies

2. Shell Programming and Scripting

Match text in a range and copy value

In the files attached, I am trying to: if Files.txt $1 is in the range of Exons.txt $1, then in Files.txt $4 the value from Exons.txt $3 is copied else if no match is found Exons.txt $3 = "Intron" For example, the first value in File.txt $1 is chr1:14895-14944 and is not found in any range... (4 Replies)
Discussion started by: cmccabe
4 Replies

3. Shell Programming and Scripting

Print specific field when condition met

Hi All, Seeking for your assistance to print all the specific field when the condition met. Ex: file1.txt 1|203|3|31243|5341|6452|623|22|00|01 3|45345|123214|6534|3423|6565|643|343|232|10 if field 1 = 1 and field 3 = 3 and field 5 = 5341 and field 6 = 6452 it will print from $1 to $10.... (2 Replies)
Discussion started by: znesotomayor
2 Replies

4. Shell Programming and Scripting

Command/script to match a field and print the next field of each line in a file.

Hello, I have a text file in the below format: Source Destination State Lag Status CQA02W2K12pl:D:\CAQA ... (10 Replies)
Discussion started by: pocodot
10 Replies

5. Shell Programming and Scripting

awk to print unique text in field

I am trying to use awk to print the unique entries in $2 So in the example below there are 3 lines but 2 of the lines match in $2 so only one is used in the output. File.txt chr17:29667512-29667673 NF1:exon.1;NF1:exon.2;NF1:exon.38;NF1:exon.4;NF1:exon.46;NF1:exon.47 703.807... (5 Replies)
Discussion started by: cmccabe
5 Replies

6. Shell Programming and Scripting

awk to print unique text in field before hyphen

Trying to print the unique values in $2 before the -, currently the count is displayed. Hopefully, the below is close. Thank you :). file chr2:46603668-46603902 EPAS1-902|gc=54.3 253.1 chr2:211471445-211471675 CPS1-1205|gc=48.3 264.7 chr19:15291762-15291983 NOTCH3-1003|gc=68.8 195.8... (3 Replies)
Discussion started by: cmccabe
3 Replies

7. Shell Programming and Scripting

awk to remove field and match strings to add text

In file1 field $18 is removed.... column header is "Otherinfo", then each line in file1 is used to search file2 for a match. When a match is found the last four strings in file2 are copied to file1. Maybe: cut -f1-17 file1 and then match each line to file2 file1 Chr Start End ... (6 Replies)
Discussion started by: cmccabe
6 Replies

8. Shell Programming and Scripting

awk to search field2 in file2 using range of fields file1 and using match to another field in file1

I am trying to use awk to find all the $2 values in file2 which is ~30MB and tab-delimited, that are between $2 and $3 in file1 which is ~2GB and tab-delimited. I have just found out that I need to use $1 and $2 and $3 from file1 and $1 and $2of file2 must match $1 of file1 and be in the range... (6 Replies)
Discussion started by: cmccabe
6 Replies

9. UNIX for Beginners Questions & Answers

awk - print when condition is met

I have a file.txt containing the following: Query= HWI-ST863:386:C5Y8UACXX:3:2302:16454:89688 1:N:0:ACACGAAT Length=100 Score E Sequences producing significant alignments: (Bits) Value ... (2 Replies)
Discussion started by: tons92
2 Replies

10. Shell Programming and Scripting

awk to print lines based on text in field and value in two additional fields

In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
Discussion started by: cmccabe
0 Replies
XZDIFF(1)							     XZ Utils								 XZDIFF(1)

NAME
xzcmp, xzdiff, lzcmp, lzdiff - compare compressed files SYNOPSIS
xzcmp [cmp_options] file1 [file2] xzdiff [diff_options] file1 [file2] lzcmp [cmp_options] file1 [file2] lzdiff [diff_options] file1 [file2] DESCRIPTION
xzcmp and xdiff invoke cmp(1) or diff(1) on files compressed with xz(1), lzma(1), gzip(1), or bzip2(1). All options specified are passed directly to cmp or diff. If only one file is specified, then the files compared are file1 (which must have a suffix of a supported com- pression format) and file1 from which the compression format suffix has been stripped. If two files are specified, then they are uncom- pressed if necessary and fed to cmp(1) or diff(1). The exit status from cmp or diff is preserved. The names lzcmp and lzdiff are provided for backward compatibility with LZMA Utils. SEE ALSO
cmp(1), diff(1), xz(1), gzip(1), bzip2(1), zdiff(1) BUGS
Messages from the cmp(1) or diff(1) programs refer to temporary filenames instead of those specified. Tukaani 2009-07-05 XZDIFF(1)
All times are GMT -4. The time now is 01:14 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy