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Top Forums Shell Programming and Scripting Count number of unique values in each column of array Post 303011276 by Geneanalyst on Tuesday 16th of January 2018 05:13:00 AM
Old 01-16-2018
Quote:
Originally Posted by Don Cragun
You have given us a 57.9KB a.txt and a 575.5KB a1.txt (which is created by your script from a.txt and should, therefore, be smaller than a.txt but is instead almost 10 times larger). Your script also creates a2.txt from a1.vcf. But, you haven't shown us what the contents of a1.vcf look like.

Please show us:
  1. the a1.txt that should be created from the sample a.txt you provided in post #14,
  2. a sample a.vcf file and a description of its contents (explaining what the field separator is in this file, what fields are used from which lines), and
  3. the exact output you hope to produce from those sample a.txt and a.vcf files.
Hi Don, a1.vcf is a typo. It should be a1.txt. For some reason, I don't have an edit button for post 14.

I clipped off the bottom of a.txt because the file was a large 86M file. The bottom part is not necessary because it is all a bunch of 0/0 0/1 1/1 and ./.. and a repeat of the preceding rows I just wanted to show the header part plus some of the data (0/0 0/1 1/1 ./.)

The last portion of post 14 shows the desired output, with a column for the sample names ( row 28 in a.txt), the counts of values for each sample; 0/0, 0/1, 1/1, ./. (from a2.txt), a column for the SUM of 0/0 and 0/1 values. A sorting from high to low by column containing the SUM of 0/0 and 0/1.
 

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XCOLORS(1)                                                    General Commands Manual                                                   XCOLORS(1)

NAME
xcolors - display all X11 color names and colors SYNOPSIS
xcolors [ -start color ] [ -near color ] [ -distance howfar ] DESCRIPTION
xcolors reads the rgb.txt file that defines the color names the X server knows and displays the colors found. At the top of the window is a sample region containing text. By clicking on the color names, the color of the sample text can be changed. Mouse button 1 changes the foreground; button 2 changes the background. The text can also be edited. Typing ``q'' exits the program. OPTIONS
In addition the the usual X Toolkit options, xcolors understands these command line options: -start name specify a color name to start with; colors before this one in the rgb.txt file are skipped. This option is useful if there are more colors than will fit on your screen or in your colormap. -rgbfile filename specify an alternate color database file to read. -near nearcolor only show colors near this one in the RGB space. All colors within a sphere in the RGB-space centered on nearcolor are displayed. -distance howfar defines how close colors have to be to nearcolor to be displayed. This option sets the radius of the sphere used by the -near option. The scale is such that the RGB cube is 256 units on a side. The default is 64. ACTIONS
set-foreground([color]) Set the foreground color of the sample region. If no color is provided, the color is taken from the border color of the widget where the action occurred. set-background([color]) Same as set-foreground() but sets the background color. quit() Exit xcolors. RESOURCES
Xcolors has a few top-level application resources that allow customizations that are specific to xcolors. startColor (classStartColor) See the -start option. rgbFile (classRgbFile) See the -rgbfile option. nearColor (classNearColor) See the -near option. nearDistance (classNearDistance) See the -distance option. WIDGET HIERARCHY
Knowing the name and position in the hierarchy of each widget is useful when specifying resources for them. In the chart below, the class and name of each widget is given. Xcolors xcolors Paned panes AsciiText sample Viewport viewport Box colors Label colorname Label colorname . . . FILES
/etc/X11/rgb.txt X color names and values. BUGS
Assumes that all names for the same color are consecutive in the rgb.txt file. Because xcolors cannot read the server's color name database, the color names it uses may not match those in the server. This is most likely to happen if xcolors is run from a remote host. The program would be faster if it used gadgets instead of widgets for the color spots. AUTHOR
Stephen Gildea, MIT X Consortium X Version 11 3 October 1991 XCOLORS(1)
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