No apologies needed as people in these fora are here to help. Posts don't disturb anybody - what IS disturbing is if people don't learn, be it to comply to forum rules, how to resonably specify a problem, or to apply / adapt coding hints to actual problerms.
Your code sample doesn't word with the sample in post#1 as the field separator in the data is a <TAB> followed by multiple spaces (matched by the default awkFS) and the code has | . Try
and report back the results.
Hi all,
I have a huge csv file with the following format of data,
Num SNPs, 549997
Total SNPs,555352
Num Samples, 157
SNP, SampleID, Allele1, Allele2
A001,AB1,A,A
A002,AB1,A,A
A003,AB1,A,A
...
...
...
I would like to write out a list of unique SNP (column 1). Could you... (3 Replies)
Hi,
Need to find a duplicate records on the first column,
ANU4501710430989 0000000W20389390
ANU4501710430989 0000000W67065483
ANU4501130050520 0000000W80838713
ANU4501210170685 0000000W69246611... (3 Replies)
Hi Unix gurus,
Maybe it is too much to ask for but please take a moment and help me out. A very humble request to you gurus. I'm new to Unix and I have started learning Unix. I have this project which is way to advanced for me.
File format: CSV file
File has four columns with no header... (8 Replies)
Hi,
I want to remove duplicate records including the first line based on column1. For example
inputfile(filer.txt):
-------------
1,3000,5000
1,4000,6000
2,4000,600
2,5000,700
3,60000,4000
4,7000,7777
5,999,8888
expected output:
----------------
3,60000,4000
4,7000,7777... (5 Replies)
I was reading this thread. It looks like a simpler way to say this is to only keep uniq lines based on field or column 1.
https://www.unix.com/shell-programming-scripting/165717-removing-duplicate-records-file-based-single-column.html
Can someone explain this command please? How are there no... (5 Replies)
I have a .CSV file with the below format:
"column 1","column 2","column 3","column 4","column 5","column 6","column 7","column 8","column 9","column 10
"12310","42324564756","a simple string with a , comma","string with or, without commas","string 1","USD","12","70%","08/01/2013",""... (2 Replies)
Hi,
I have to output a new csv file from an input csv file with first unique value in the first column.
input csv file
color product id status
green 102 pass
yellow 201 hold
yellow 202 keep
green 101 ok
green 103 hold
yellow 203 ... (5 Replies)
cat sample.csv
ID,Name,no
1,AAA,1
2,BBB,1
3,AAA,1
4,BBB,1
cut -d',' -f2 sample.csv | sort | uniq
this gives only the 2nd column values
Name
AAA
BBB
How to I get all the columns of CSV along with this? (1 Reply)
Hello,
I have a script that is generating a tab delimited output file.
num Name PCA_A1 PCA_A2 PCA_A3
0 compound_00 -3.5054 -1.1207 -2.4372
1 compound_01 -2.2641 0.4287 -1.6120
3 compound_03 -1.3053 1.8495 ... (3 Replies)
I have csv file with 30, 40 columns
Pasting just three column for problem description
I want to filter record if column 1 matches CN or DN then,
check for values in column 2 if column contain 1235, 1235 then in column 3 values must be sequence of 2345, 2345
and if column 2 contains 6789, 6789... (5 Replies)
Discussion started by: as7951
5 Replies
LEARN ABOUT OPENDARWIN
join
JOIN(1) BSD General Commands Manual JOIN(1)NAME
join -- relational database operator
SYNOPSIS
join [-a file_number | -v file_number] [-e string] [-o list] [-t char] [-1 field] [-2 field] file1 file2
DESCRIPTION
The join utility performs an ``equality join'' on the specified files and writes the result to the standard output. The ``join field'' is
the field in each file by which the files are compared. The first field in each line is used by default. There is one line in the output
for each pair of lines in file1 and file2 which have identical join fields. Each output line consists of the join field, the remaining
fields from file1 and then the remaining fields from file2.
The default field separators are tab and space characters. In this case, multiple tabs and spaces count as a single field separator, and
leading tabs and spaces are ignored. The default output field separator is a single space character.
Many of the options use file and field numbers. Both file numbers and field numbers are 1 based, i.e. the first file on the command line is
file number 1 and the first field is field number 1. The following options are available:
-a file_number
In addition to the default output, produce a line for each unpairable line in file file_number.
-e string
Replace empty output fields with string.
-o list
The -o option specifies the fields that will be output from each file for each line with matching join fields. Each element of list
has the either the form 'file_number.field', where file_number is a file number and field is a field number, or the form '0' (zero),
representing the join field. The elements of list must be either comma (``,'') or whitespace separated. (The latter requires quot-
ing to protect it from the shell, or, a simpler approach is to use multiple -o options.)
-t char
Use character char as a field delimiter for both input and output. Every occurrence of char in a line is significant.
-v file_number
Do not display the default output, but display a line for each unpairable line in file file_number. The options -v 1 and -v 2 may be
specified at the same time.
-1 field
Join on the field'th field of file 1.
-2 field
Join on the field'th field of file 2.
When the default field delimiter characters are used, the files to be joined should be ordered in the collating sequence of sort(1), using
the -b option, on the fields on which they are to be joined, otherwise join may not report all field matches. When the field delimiter char-
acters are specified by the -t option, the collating sequence should be the same as sort(1) without the -b option.
If one of the arguments file1 or file2 is ``-'', the standard input is used.
DIAGNOSTICS
The join utility exits 0 on success, and >0 if an error occurs.
COMPATIBILITY
For compatibility with historic versions of join, the following options are available:
-a In addition to the default output, produce a line for each unpairable line in both file 1 and file 2.
-j1 field
Join on the field'th field of file 1.
-j2 field
Join on the field'th field of file 2.
-j field
Join on the field'th field of both file 1 and file 2.
-o list ...
Historical implementations of join permitted multiple arguments to the -o option. These arguments were of the form
'file_number.field_number' as described for the current -o option. This has obvious difficulties in the presence of files named
'1.2'.
These options are available only so historic shellscripts don't require modification and should not be used.
STANDARDS
The join command conforms to IEEE Std 1003.1-2001 (``POSIX.1'').
SEE ALSO awk(1), comm(1), paste(1), sort(1), uniq(1)BSD April 18, 2002 BSD