12-28-2017
Thanks Scott! Worked like a charm!
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1. Shell Programming and Scripting
I want to find the top N entries for a certain field based on the values of another field.
For example if N=3, we want the 3 best values for each entry:
Entry1 ||| 100
Entry1 ||| 95
Entry1 ||| 30
Entry1 ||| 80
Entry1 ||| 50
Entry2 ||| 40
Entry2 ||| 20
Entry2 ||| 10
Entry2 ||| 50... (1 Reply)
Discussion started by: FrancoisCN
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2. Shell Programming and Scripting
Hi.
I have a tab separated file that has a couple nearly identical lines. When doing:
sort file | uniq > file.new
It passes through the nearly identical lines because, well, they still are unique.
a)
I want to look only at field x for uniqueness and if the content in field x is the... (1 Reply)
Discussion started by: rocket_dog
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3. Shell Programming and Scripting
Hi,
Is there any short method to print from a particular field till another filed using awk?
Example File:
File1
====
1|2|acv|vbc|......|100|342
2|3|afg|nhj|.......|100|346
Expected output:
File2
====
acv|vbc|.....|100
afg|nhj|.....|100 (8 Replies)
Discussion started by: machomaddy
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4. UNIX for Dummies Questions & Answers
Hey,
I'm sure this is answered somewhere but my Googling has turned up nothing. I have a file with data in the following format:
<desription of event> at <time and date>The desription of the event is variable length and hence when the list is displayed it is hard to easily see the date (and... (8 Replies)
Discussion started by: RECrerar
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5. Shell Programming and Scripting
I have a need to print nth field based on the parameter passed. Suppose I have 3 fields in a file, passing 1 to the function should print 1st field and so on.
I have attempted below function but this throws an error due to incorrect awk syntax.
function calcmaxlen
{
FIELDMAXLEN=0
... (5 Replies)
Discussion started by: krishmaths
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6. UNIX for Dummies Questions & Answers
I would like to print unique lines without sort or unique. Unfortunately the server I am working on does not have sort or unique. I have not been able to contact the administrator of the server to ask him to add it for several weeks. (7 Replies)
Discussion started by: cokedude
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7. Shell Programming and Scripting
I am trying to use awk to print the unique entries in $2
So in the example below there are 3 lines but 2 of the lines match in $2 so only one is used in the output.
File.txt
chr17:29667512-29667673 NF1:exon.1;NF1:exon.2;NF1:exon.38;NF1:exon.4;NF1:exon.46;NF1:exon.47 703.807... (5 Replies)
Discussion started by: cmccabe
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8. Shell Programming and Scripting
Trying to print the unique values in $2 before the -, currently the count is displayed. Hopefully, the below is close. Thank you :).
file
chr2:46603668-46603902 EPAS1-902|gc=54.3 253.1
chr2:211471445-211471675 CPS1-1205|gc=48.3 264.7
chr19:15291762-15291983 NOTCH3-1003|gc=68.8 195.8... (3 Replies)
Discussion started by: cmccabe
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9. Shell Programming and Scripting
Hello experts,
I am converting a number into its binary output as :
read n
echo "obase=2;$n" | bc
I wish to count the maximum continuous occurrences of the digit 1.
Example :
1. The binary equivalent of 5 = 101. Hence the output must be 1.
2. The binary... (3 Replies)
Discussion started by: H squared
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10. Shell Programming and Scripting
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)
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UNIQ(1) User Commands UNIQ(1)
NAME
uniq - report or omit repeated lines
SYNOPSIS
uniq [OPTION]... [INPUT [OUTPUT]]
DESCRIPTION
Filter adjacent matching lines from INPUT (or standard input), writing to OUTPUT (or standard output).
With no options, matching lines are merged to the first occurrence.
Mandatory arguments to long options are mandatory for short options too.
-c, --count
prefix lines by the number of occurrences
-d, --repeated
only print duplicate lines, one for each group
-D print all duplicate lines
--all-repeated[=METHOD]
like -D, but allow separating groups with an empty line; METHOD={none(default),prepend,separate}
-f, --skip-fields=N
avoid comparing the first N fields
--group[=METHOD]
show all items, separating groups with an empty line; METHOD={separate(default),prepend,append,both}
-i, --ignore-case
ignore differences in case when comparing
-s, --skip-chars=N
avoid comparing the first N characters
-u, --unique
only print unique lines
-z, --zero-terminated
line delimiter is NUL, not newline
-w, --check-chars=N
compare no more than N characters in lines
--help display this help and exit
--version
output version information and exit
A field is a run of blanks (usually spaces and/or TABs), then non-blank characters. Fields are skipped before chars.
Note: 'uniq' does not detect repeated lines unless they are adjacent. You may want to sort the input first, or use 'sort -u' without
'uniq'. Also, comparisons honor the rules specified by 'LC_COLLATE'.
AUTHOR
Written by Richard M. Stallman and David MacKenzie.
REPORTING BUGS
GNU coreutils online help: <http://www.gnu.org/software/coreutils/>
Report uniq translation bugs to <http://translationproject.org/team/>
COPYRIGHT
Copyright (C) 2017 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law.
SEE ALSO
comm(1), join(1), sort(1)
Full documentation at: <http://www.gnu.org/software/coreutils/uniq>
or available locally via: info '(coreutils) uniq invocation'
GNU coreutils 8.28 January 2018 UNIQ(1)