I am trying to create a bash script that will create new function by using the user input. The below will create the necessary files in the correct format, however when it comes to the # create function I am at a loss.
If the name entered was NEWNAME and the genes were GENE1,GENE2 then two files would be created using NEWNAME. That executes as expected and in the # convert name to lower case, NEWNAME is converted to lowercase as variable string. This variable starts the function. The ... in the code are mostly hardcoded lines that use either NEWNAME or $string in them. I am not sure if this is the best way but maybe its a start. Thank you .
Code:
#!/bin/bash
# enter name
printf "What is the name of the panel (please use CAPS): "; read name
# enter gene input
printf "%s \n" "Please enter gene(s), use a comma between multiple:" ; IFS="," read -a genes
for (( i = 0; i < ${#genes[@]}; i++ ))
do
printf "%s\n" "${genes[$i]}" > /home/cmccabe/Desktop/NGS/panels/new.txt
# remove line endings and trim
sed 's/\r$//' < /home/cmccabe/Desktop/NGS/panels/new.txt | sed 's/^[ \t]*//;s/[ \t]*$//' > /home/cmccabe/Desktop/NGS/panels/${name}_unix_trim.bed
done
# create total target length for input
awk 'NR==FNR{A[$1];next}$1 in A' /home/cmccabe/Desktop/NGS/panels/${name}_unix_trim.bed /home/cmccabe/Desktop/NGS/bed/bedtools/IDP_total_target_length_by_panel/IDP_unix_trim_total_target_length.bed > /home/cmccabe/Desktop/NGS/bed/bedtools/IDP_total_target_length_by_panel/${name}_unix_trim_total_target_length.bed
#-------------------------------------------------------------------------#
# convert name to lower case
y="$name"
val=$(echo "$y" | tr '[:upper:]' '[:lower:]')
string="$val"
echo "This is the new panel to add" $string
# create function
printf "$string() {"
.....
.....
Hi All,
Please ignore if terminology used is incorrect as I am new to Unix.
I want to create a Multi user input form which looks something like this:
ABCD TOOL
Logged User: abcd12 ... (4 Replies)
Ok, I have a script with a commandline option that allows the user to add a custom function to the script file. I have tried everything in my limited knowledge of sed to get this to work and keep coming up short. I need sed to search for a line starting with a pattern, I've got that part so far,... (0 Replies)
Hi, How to create array every time user input and store user input and display all array
print " Enter input "
my @input = split(' ', $input)
chmop($input = <STDIN>;
foreach ($input)
{
@array= @input;
}
print @array"\n"; (1 Reply)
I need some help to write a ksh script.
My code so far (pretty bad, sorry):
#! /bin/ksh
echo "Calculate average"
UserDecision=y
while test $UserDecision = y
do
echo "Enter a number: "
read Number1
echo "Enter a number: "
read Number2
echo "Do you want to enter another number?... (2 Replies)
Hi Dears,
I have one script to create new users with information in one plain text file. This script will read all lines in the file and create one users for one line.
Sample file:
#action;login,full name title,expire date,project
+;gmwen,Bruce Wen QA,04/01/2012,BT
+;xxdeng,Shown Deng... (4 Replies)
I want to create an array which can store the strings from the user input in shell script .
example :-
I want to store the 5 fruits name in a single array which the user provides . (1 Reply)
i have a script which takes input from user, if user gives either Y/y then it should continue, else it should quit by displaying user cancelled.
#!/bin/sh
echo " Enter your choice to continue y/Y OR n/N to quit "
read A
if
then
echo " user requested to continue "
##some commands... (7 Replies)
Good Evening. I'm new to C. Can you please help me.
I'm creating an error checking function, user will input a string, this will check if the input is all alphabet or all letters only. If there is a digit or other special char, it will print Error then ask input from user again.
Here's my... (1 Reply)
Hi All,
I have a UNIX script which reads "PxyType" (read PxyType) as input from user and a file (eg : "File.json") with the list all PxyType's.
Based on the user input for "PxyType" in "File.json", I want to redirect each matched line to a different file ("File1,2,3,..json").
Can you... (7 Replies)
In the below bash a file is downloaded when the program is opened and then that file is searched based on user input and the result is written to a new file.
For example, the bash is opened and the download.txt is downloaded, the user then enters the id (NA04520). The id is used to search... (5 Replies)
Discussion started by: cmccabe
5 Replies
LEARN ABOUT DEBIAN
syslogout
SYSLOGOUT(8) System Manager's Manual SYSLOGOUT(8)NAME
syslogout - modular centralized shell logout mechanism
DESCRIPTION
syslogout is a generic approach to enable centralized shell logout actions for all users of a given system in a modular and centralized way
mostly aimed at avoiding work for lazy sysadmins. It has only been tested to work with the bash shell.
It basically consists of the small /etc/syslogout shell script which invokes other small shell scripts having a .bash suffix which are con-
tained in the /etc/syslogout.d/ directory. The system administrator can drop in any script he wants without any naming convention other
than that the scripts need to have a .bash suffix to enable automagic sourcing by the /etc/syslogout script.
For shell sessions, the contents of /etc/syslogout.d/" will be sourced by every user at logout if the following lines are present in his
$HOME/.bash_logout:
if [ -f /etc/syslogout ]; then
. /etc/syslogout
fi
If used for X sessions it is advisable to include the former statement into the Xreset script of the X display manager instead to prevent
that closing of an terminal emulator window yields unexpected results in your running X session if your X11 terminal emulator is using a
login shell. Be sure then to run it under the user-id of the X session's user. See the example files in /usr/share/doc/syslogout/ for
illustration.
Users not wanting /etc/syslogout to be sourced for their environment can easily disable it's automatic mechanism. It can be disabled by
simply creating an empty file called $HOME/.nosyslogout in the user's home directory using e.g. the touch(1) command.
Any single configuration file in /etc/syslogout.d/ can simply be overridden by any user by creating a private $HOME/.syslogout.d/ directory
which may contain a user's own version of any configuration file to be sourced instead of the system default. It's names have just to
match exactly the system's default /etc/syslogout.d/ configuration files. Empty versions of these files contained in the $HOME/.syslo-
gout.d/ directory automatically disable sourcing of the system wide version.
Naturally, users can add and include their own private scripts to be automagically executed by /etc/syslogout at logout time.
OPTIONS
There are no options other than those dictated by shell conventions. Anything is defined within the configuration scripts themselves.
SEE ALSO
The README files and configuration examples contained in /usr/share/doc/syslogout/ and the manual page for bash(1), xdm(1x),
xdm.options(5), and wdm(1x). Recommended further reading is everything related with shell programming.
If you need a similar mechanism for executing code at login time check out the related package sysprofile(8) which is a very close compan-
ion to syslogout.
BUGS
syslogout in its current form is mainly restricted to bash(1) syntax. In fact it is actually a rather embarrassing quick and dirty hack
than anything else - but it works. It serves the practical need to enable a centralized bash configuration until something better
becomes available. Your constructive criticism in making this into something better" is very welcome. Before i forget to mention it: we
take patches... ;-)
AUTHOR
syslogout was developed by Paul Seelig <pseelig@debian.org> specifically for the Debian GNU/Linux system. Feel free to port it to and use
it anywhere else under the conditions of either the GNU public license or the BSD license or both. Better yet, please help to make it into
something more worthwhile than it currently is.
SYSLOGOUT(8)
12-28-2017
.