Hi,
Can someone help me with creating a bash shell script.
I need to create a script that gets a positive number n as an argument.
The script must create n directories in the current directory with names like map_1, map_2 etcetera. Each directory must be contained within its predecessor. So... (7 Replies)
Hi,
I am new to shell-scripting, and doing a lot of reading. I am having some trouble getting started with a simple testing of scripting. I have been experimenting with if, loops, for, test, etc., but still unsure. I seem to have the hang of it when it comes to creating a single file or... (6 Replies)
Hi.
I have two text files(tables) which include some information and I want to make some query codes using them.
First of all, I want to create bash script that read this two tables, create/open database and insert data from files into database.
#!/bin/bash
while read line; do
... (1 Reply)
Hi, I am a new on this forum but i like :) I need a script in bash which will be crating a new user with folder for websites. For example: I will run this program and he creating a new user(with my name) and folder whcich name like user and if i will localho/~user in browser, she show me files from... (1 Reply)
Hello Everyone,
I am currently trying to write a Bash Script to call a PCAP file. The command I will use in the script will be the following:
tshark -r test.pcap -T fields -e frame.number -e frame.time -e eth.src -e eth.dst -e ip.src -e ip.dst -r ip.proto -E header=y -E separator=, quote=d -E... (4 Replies)
I've got this script to loop through all folders and move files that are more than 2 years old. I'm using the install command because it creates the necessary directories on the destination path and then I remove the source. I'd like to change the script to use the mv command since it is much... (4 Replies)
Hi,
I need to perform the untar and rm operation if the file found is a .tar and does not have test.tar or hello.tar as the file names.
Below is the loop to check the same.
for tf in *.tar
do if ]
then found=1
... (1 Reply)
Hey, im fairly new to unix and Im trying to make this unix project that would display a menu and do the following.
MENU
===========================
(p, P) Print users info
(a, A) Add new user
(s, S) Search user
(d, D) Delete user
(x,X) Exit
Enter your choice:
Trying to... (3 Replies)
I want get from user and pass these parameters to bash script. script should copy files in user home directory.
FYI: each file might be exist or not, might be one of them exist or four of them.
Here is my script, it always copy file1 and seems only one of them execute!
#!/bin/bash
for... (6 Replies)
Discussion started by: indeed_1
6 Replies
LEARN ABOUT DEBIAN
lastal
LASTAL(1) User Commands LASTAL(1)NAME
lastal - genome-scale comparison of biological sequences
SYNOPSIS
lastal [options] lastdb-name fasta-sequence-file(s)
DESCRIPTION
Find local sequence alignments.
Score options (default settings): -r: match score (DNA: 1, protein: blosum62, 0<Q<5: 6) -q: mismatch cost (DNA: 1, protein: blosum62,
0<Q<5: 18) -p: file for residue pair scores -a: gap existence cost (DNA: 7, protein: 11, 0<Q<5: 21) -b: gap extension cost (DNA: 1, pro-
tein: 2, 0<Q<5: 9) -c: unaligned residue pair cost (100000) -F: frameshift cost (off) -x: maximum score drop for gapped alignments
(max[y, a+b*20]) -y: maximum score drop for gapless alignments (t*10) -z: maximum score drop for final gapped alignments (x) -d: minimum
score for gapless alignments (e*3/5) -e: minimum score for gapped alignments (DNA: 40, protein: 100, 0<Q<5: 180)
Cosmetic options (default settings): -h: show all options and their default settings -v: be verbose: write messages about what lastal is
doing -o: output file -f: output format: 0=tabular, 1=maf (1)
Miscellaneous options (default settings): -s: strand: 0=reverse, 1=forward, 2=both (2 for DNA, 1 for protein) -m: maximum multiplicity for
initial matches (10) -l: minimum length for initial matches (1) -n: maximum number of gapless alignments per query position (infinity) -k:
step-size along the query sequence (1) -i: query batch size (1 MiB if Q>0, else 16 MiB if j=0, else 128 MiB) -u: mask lowercase during
extensions: 0=never, 1=gapless,
2=gapless+gapped but not final, 3=always (2 if lastdb -c and Q<5, else 0)
-w: supress repeats inside exact matches, offset by this distance or less (1000) -G: genetic code file -t: 'temperature' for calculating
probabilities (1/lambda) -g: 'gamma' parameter for gamma-centroid and LAMA (1) -j: output type: 0=match counts, 1=gapless, 2=redundant
gapped, 3=gapped,
4=column ambiguity estimates, 5=gamma-centroid, 6=LAMA (3)
-Q: input format: 0=fasta, 1=fastq-sanger, 2=fastq-solexa, 3=fastq-illumina,
4=prb, 5=PSSM (0)
REPORTING BUGS
Report bugs to: last (ATmark) cbrc (dot) jp
LAST home page: http://last.cbrc.jp/
lastal 199 May 2012 LASTAL(1)