Sponsored Content
Top Forums Shell Programming and Scripting Join files, omit duplicated records from one file Post 303004059 by CHoggarth on Tuesday 26th of September 2017 04:03:11 AM
Old 09-26-2017
Join files, omit duplicated records from one file

Hello

I have 2 files, eg

Code:
more file1 file2
::::::::::::::
file1
::::::::::::::
1   fromfile1
2   fromfile1
3   fromfile1
4   fromfile1
5   fromfile1
6   fromfile1
7   fromfile1
::::::::::::::
file2
::::::::::::::
3   fromfile2
5   fromfile2

I want to merge these but only include duplicated fields from the second file. So the result is

Code:
1   fromfile1
2   fromfile1
3   fromfile2
4   fromfile1
5   fromfile2
6   fromfile1
7   fromfile1

Basically merging 2 files but omitting any records in file 1 which appear in file2 based on the key field.

I've started to cobble a script together which
  • makes a list of key fields from file2
  • loops round reading that file and uses grep -v to remove records with that key from file1
  • then use uniq -d to only keep records which were duplicated (so I now have copy of file1 but with noly records 1,2,4,6,7)
  • then concatenate this file and file2

This only if file2 has exactly 2 records.

This feels like something which should be simple but I can't figure it out. I suspect I should be able to use join or maybe awk to achieve what i want but I can't get there & can't find anything through Google.

Can anyone suggest a more elegant solution to my approach? (& frankly one which works because mine doesn't)

Many thanks, Chris
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

join cols from multi files into one file

Hi Fields in Files 1,2,3,4 are pipe"|" separated. Say I want to grep col1 from File1 col3 from File2 col4 from File3 and print to File4 in the following order: col3|col1|col4 what is the best way of doing this? Thanks (2 Replies)
Discussion started by: vbshuru
2 Replies

2. Shell Programming and Scripting

Loop through files in dir, omit file with latest date

I want to loop through files in a directory but omit the file with the latest date in my list of files. How would I accomplish this? Thanks (2 Replies)
Discussion started by: stringzz
2 Replies

3. UNIX for Dummies Questions & Answers

Using cp -r command to selectively omit *.dat files while copying a directory.

Hi all, I want to copy a directory named Ec1 to another directory named Ec2, newly created. But Ec1 has a bunch of *.dat files and many many other kinds of files. Whle creating Ec2, I selectively want to omit the *.dat files since they are huge files of the order of 100 MBs and there are... (5 Replies)
Discussion started by: d_sai_kumar
5 Replies

4. Shell Programming and Scripting

Command to list only files omit directories.

Hi All I am writting a script that does a comparison between files in 2 diffectent directories. To do this I need a command that will list out only the files in a give directory and omit any sub dorectories with that directory. But I am unable to find it. Please Help. I tried ls... (5 Replies)
Discussion started by: Veenak15
5 Replies

5. Shell Programming and Scripting

Omit Blank Lines while comparing two files.

Hello All, I am writting file comparison Utility and I have encountered such a senario where there are 2 files such as follows- 1#!/usr/local/bin/python 2 import gsd.scripts.admin.control.gsdPageEscalate 3.gsd.scripts.admin.control.gsdPageEscalate.main() 1 #!/usr/local/bin/python... (10 Replies)
Discussion started by: Veenak15
10 Replies

6. UNIX for Dummies Questions & Answers

Join 2 files with multiple columns: awk/grep/join?

Hello, My apologies if this has been posted elsewhere, I have had a look at several threads but I am still confused how to use these functions. I have two files, each with 5 columns: File A: (tab-delimited) PDB CHAIN Start End Fragment 1avq A 171 176 awyfan 1avq A 172 177 wyfany 1c7k A 2 7... (3 Replies)
Discussion started by: InfoSeeker
3 Replies

7. UNIX for Dummies Questions & Answers

How to use the the join command to join multiple files by a common column

Hi, I have 20 tab delimited text files that have a common column (column 1). The files are named GSM1.txt through GSM20.txt. Each file has 3 columns (2 other columns in addition to the first common column). I want to write a script to join the files by the first common column so that in the... (5 Replies)
Discussion started by: evelibertine
5 Replies

8. Shell Programming and Scripting

Listing the file name and no of records in each files for the files created on a specific day

Hi, I want to display the file names and the record count for the files in the 2nd column for the files created today. i have written the below command which is listing the file names. but while piping the above command to the wc -l command its not working for me. ls -l... (5 Replies)
Discussion started by: Showdown
5 Replies

9. Shell Programming and Scripting

Combine/omit data from 2 files

i made a script on my own. this is for the inventory to all of my AWS servers, and i run it to all of my servers to get the hostname, please look at file2. Then i need some data in file3 as well,. i need to combine them #cat file1 192.10.1.41 server.age.com ###### 192.10.0.40 ssh cant... (10 Replies)
Discussion started by: kenshinhimura
10 Replies

10. Shell Programming and Scripting

Remove duplicated records and update last line record counts

Hi Gurus, I need to remove duplicate line in file and update TRAILER (last line) record count. the file is comma delimited, field 2 is key to identify duplicated record. I can use below command to remove duplicated. but don't know how to replace last line 2nd field to new count. awk -F","... (11 Replies)
Discussion started by: green_k
11 Replies
JOIN(1) 						      General Commands Manual							   JOIN(1)

NAME
join - relational database operator SYNOPSIS
join [-an] [-e s] [-o list] [-tc] file1 file2 DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard input is used. File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in each line. There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con- sists of the common field, then the rest of the line from file1, then the rest of the line from file2. Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis- carded. These options are recognized: -an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2. -e s Replace empty output fields by string s. -o list Each output line comprises the fields specified in list, each element of which has the form n.m, where n is a file number and m is a field number. -tc Use character c as a separator (tab character). Every appearance of c in a line is significant. SEE ALSO
sort(1), comm(1), awk(1). BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort. The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous. 7th Edition April 29, 1985 JOIN(1)
All times are GMT -4. The time now is 11:18 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy