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Top Forums Shell Programming and Scripting awk to assign points to variables based on conditions and update specific field Post 303003894 by cmccabe on Friday 22nd of September 2017 08:38:30 AM
Old 09-22-2017
if(index$f["FuncrefGene"]

This is $7 or Func.refGene in the tab-delimited input.txt. Thank you Smilie.

I will make the change in the variables, I didn't even catch that. Thank you Smilie.

Last edited by cmccabe; 09-22-2017 at 09:39 AM.. Reason: added details
 

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catch(n)						       Tcl Built-In Commands							  catch(n)

__________________________________________________________________________________________________________________________________________________

NAME
catch - Evaluate script and trap exceptional returns SYNOPSIS
catch script ?varName? _________________________________________________________________ DESCRIPTION
The catch command may be used to prevent errors from aborting command interpretation. Catch calls the Tcl interpreter recursively to exe- cute script, and always returns without raising an error, regardless of any errors that might occur while executing script. If script raises an error, catch will return a non-zero integer value corresponding to one of the exceptional return codes (see tcl.h for the definitions of code values). If the varName argument is given, then the variable it names is set to the error message from interpret- ing script. If script does not raise an error, catch will return 0 (TCL_OK) and set the variable to the value returned from script. Note that catch catches all exceptions, including those generated by break and continue as well as errors. The only errors that are not caught are syntax errors found when the script is compiled. This is because the catch command only catches errors during runtime. When the catch statement is compiled, the script is compiled as well and any syntax errors will generate a Tcl error. EXAMPLES
The catch command may be used in an if to branch based on the success of a script. if { [catch {open $someFile w} fid] } { puts stderr "Could not open $someFile for writing $fid" exit 1 } The catch command will not catch compiled syntax errors. The first time proc foo is called, the body will be compiled and a Tcl error will be generated. proc foo {} { catch {expr {1 +- }} } KEYWORDS
catch, error Tcl 8.0 catch(n)
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