Im not sure I follow completly, but it is close... line 3 is the multiple NM_, but only the second p. looks to be updated. Can you add comments if possible? Thank you .
Code:
1 chr1 949597 949597 C T exonic ISG15 . . synonymous SNV ISG15:NM_005101:exon2:c.237C>T:p.Asp79Asp rs61766284
2 chr1 949654 949654 A G exonic ISG15 . . synonymous SNV ISG15:NM_005101:exon2:c.294A>G:p.Val98Val rs8997
3 chr1 949654 949654 A G exonic ISG15 . . synonymous SNV ISG15:NM_005101:exon2:c.294A>G:p.V98V;ISG15:NM_005101:exon2:c.237C>T:p.Asp79Asp rs8997
My input:
File_1:
2000_t
g1110.b1
abb.1
2001_t
g1111.b1
abb.2
abb.2
g1112.b1
abb.3
2002_t
.
.
File_2:
2000_t Ali england 135
abb.1 Zoe british 150
2001_t Ali england 305
g1111.b1 Lucy russia 126 (6 Replies)
Hi, I have 2 files that I have modified to basically match each other, however I want to determine what (if any) line in file 1 does not exist in file 2. I need to match column $1 and $2 as a single string in file1 to $1 and $2 in file2 as these two columns create a match.
I'm stuck in an AWK... (9 Replies)
Help needed urgently please.
I have a large file - a few hundred thousand lines.
Sample
CP START ACCOUNT
1234556
name 1
CP END ACCOUNT
CP START ACCOUNT
2224444
name 1
CP END ACCOUNT
CP START ACCOUNT
333344444
name 1
CP END ACCOUNT
I need to split this file each time "CP START... (7 Replies)
Hi,
I need help with this-
input.txt :
L B white
X Y white
A B brown
M Y black
Read this input file and if 3rd column is "white", then add specific lines to another file insert.txt.
If 3rd column is brown, add different set of lines to insert.txt, and so on.
For example, the given... (6 Replies)
If $1 in file1 matches $2 in file2. Then the value in $2 of file2 is updated to $1"."$2 of file2. The awk seems to only match the two files but not update. Thank you :).
awk
awk 'NR==FNR{A ; next} $1 in A { $2 = a }1' file1 file2
file1
name version
NM_000593 5
NM_001257406... (3 Replies)
I am trying to match $1 in file1 with $2 in file2. If a match is found then $3 and $4 of file2 are copied to file1. Both files are tab-delimeted and I am getting a syntax error and would also like to update file1 in-place without creating a new file, but am not sure how. Thank you :).
file1
... (19 Replies)
I am trying to use awk to match two files that are tab-delimited. When a match is found between file1 $1 and file2 $4, $4 in file2 is updated using the $2 value in file1. If no match is found then the next line is processed. Thank you :).
file1
uc001bwr.3 ADC
uc001bws.3 ADC... (4 Replies)
I am trying to create a cronjob that will run on startup that will look at a list.txt file to see if there is a later version of a database using database.txt as the source. The matching lines are written to output.
$1 in database.txt will be in list.txt as a partial match. $2 of database.txt... (2 Replies)
In the perl below I am trying to set/update the value of $14 (last field) in file2, using the matching NM_ in $12
or $9 in file2 with the NM_ in $2 of file1.
The lengths of $9 and $12 can be variable but what is consistent is the start pattern will always be NM_ and the end pattern is always
;... (4 Replies)
Trying to use awk to store the value of $5 in file1 in array x. That array x is then used to search $4 of file1 to find aa match (I use x to skip the header in file1). Since $4 can have multiple strings in it seperated by a , (comma), I split them and iterate througn each split looking for a match.... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT DEBIAN
clags2
clags2.f(3) LAPACK clags2.f(3)NAME
clags2.f -
SYNOPSIS
Functions/Subroutines
subroutine clags2 (UPPER, A1, A2, A3, B1, B2, B3, CSU, SNU, CSV, SNV, CSQ, SNQ)
CLAGS2
Function/Subroutine Documentation
subroutine clags2 (logicalUPPER, realA1, complexA2, realA3, realB1, complexB2, realB3, realCSU, complexSNU, realCSV, complexSNV, realCSQ,
complexSNQ)
CLAGS2
Purpose:
CLAGS2 computes 2-by-2 unitary matrices U, V and Q, such
that if ( UPPER ) then
U**H *A*Q = U**H *( A1 A2 )*Q = ( x 0 )
( 0 A3 ) ( x x )
and
V**H*B*Q = V**H *( B1 B2 )*Q = ( x 0 )
( 0 B3 ) ( x x )
or if ( .NOT.UPPER ) then
U**H *A*Q = U**H *( A1 0 )*Q = ( x x )
( A2 A3 ) ( 0 x )
and
V**H *B*Q = V**H *( B1 0 )*Q = ( x x )
( B2 B3 ) ( 0 x )
where
U = ( CSU SNU ), V = ( CSV SNV ),
( -SNU**H CSU ) ( -SNV**H CSV )
Q = ( CSQ SNQ )
( -SNQ**H CSQ )
The rows of the transformed A and B are parallel. Moreover, if the
input 2-by-2 matrix A is not zero, then the transformed (1,1) entry
of A is not zero. If the input matrices A and B are both not zero,
then the transformed (2,2) element of B is not zero, except when the
first rows of input A and B are parallel and the second rows are
zero.
Parameters:
UPPER
UPPER is LOGICAL
= .TRUE.: the input matrices A and B are upper triangular.
= .FALSE.: the input matrices A and B are lower triangular.
A1
A1 is REAL
A2
A2 is COMPLEX
A3
A3 is REAL
On entry, A1, A2 and A3 are elements of the input 2-by-2
upper (lower) triangular matrix A.
B1
B1 is REAL
B2
B2 is COMPLEX
B3
B3 is REAL
On entry, B1, B2 and B3 are elements of the input 2-by-2
upper (lower) triangular matrix B.
CSU
CSU is REAL
SNU
SNU is COMPLEX
The desired unitary matrix U.
CSV
CSV is REAL
SNV
SNV is COMPLEX
The desired unitary matrix V.
CSQ
CSQ is REAL
SNQ
SNQ is COMPLEX
The desired unitary matrix Q.
Author:
Univ. of Tennessee
Univ. of California Berkeley
Univ. of Colorado Denver
NAG Ltd.
Date:
November 2011
Definition at line 158 of file clags2.f.
Author
Generated automatically by Doxygen for LAPACK from the source code.
Version 3.4.1 Sun May 26 2013 clags2.f(3)
09-12-2017
.