---------- Post updated 09-12-17 at 07:45 AM ---------- Previous update was 09-11-17 at 05:19 PM ----------
A line with multiple NM_ values in $12 seperated by a ; seems to chage a matching c. as well. I have tried adding in ; as a FS, but that splits eaach into multiple tabs in the output. I also added tried a break after the ostring=(ostring ((c in a) ? a[c] : c)), thinking that would process each, then break, and loop to the next... but that only processed one and then stopped. Maybe I added it in the wrong place or is there a better way? Thank you
line
Code:
R_Index Chr Start End Ref Alt Func.refGene Gene.refGene GeneDetail.refGene Inheritence ExonicFunc.refGene AAChange.refGene avsnp147
1 chr1 949654 949654 A G exonic ISG15 . . synonymous SNV ISG15:NM_005101:exon2:c.294A>G:p.V98V;ISG15:NM_005101:exon2:c.237C>T:p.D79D rs8997
current output
Code:
R_Index Chr Start End Ref Alt Func.refGene Gene.refGene GeneDetail.refGene Inheritence ExonicFunc.refGene AAChange.refGene avsnp147
1 chr1 949654 949654 A G exonic ISG15 . . synonymous SNV ISG15:NM_005101:exon2:c.294A>G:p.Val98Val;ISG15:NM_005101:exon2:c.237Cys>T:p.Asp79Asp rs8997
Last edited by cmccabe; 09-12-2017 at 09:47 AM..
Reason: fixed format
My input:
File_1:
2000_t
g1110.b1
abb.1
2001_t
g1111.b1
abb.2
abb.2
g1112.b1
abb.3
2002_t
.
.
File_2:
2000_t Ali england 135
abb.1 Zoe british 150
2001_t Ali england 305
g1111.b1 Lucy russia 126 (6 Replies)
Hi, I have 2 files that I have modified to basically match each other, however I want to determine what (if any) line in file 1 does not exist in file 2. I need to match column $1 and $2 as a single string in file1 to $1 and $2 in file2 as these two columns create a match.
I'm stuck in an AWK... (9 Replies)
Help needed urgently please.
I have a large file - a few hundred thousand lines.
Sample
CP START ACCOUNT
1234556
name 1
CP END ACCOUNT
CP START ACCOUNT
2224444
name 1
CP END ACCOUNT
CP START ACCOUNT
333344444
name 1
CP END ACCOUNT
I need to split this file each time "CP START... (7 Replies)
Hi,
I need help with this-
input.txt :
L B white
X Y white
A B brown
M Y black
Read this input file and if 3rd column is "white", then add specific lines to another file insert.txt.
If 3rd column is brown, add different set of lines to insert.txt, and so on.
For example, the given... (6 Replies)
If $1 in file1 matches $2 in file2. Then the value in $2 of file2 is updated to $1"."$2 of file2. The awk seems to only match the two files but not update. Thank you :).
awk
awk 'NR==FNR{A ; next} $1 in A { $2 = a }1' file1 file2
file1
name version
NM_000593 5
NM_001257406... (3 Replies)
I am trying to match $1 in file1 with $2 in file2. If a match is found then $3 and $4 of file2 are copied to file1. Both files are tab-delimeted and I am getting a syntax error and would also like to update file1 in-place without creating a new file, but am not sure how. Thank you :).
file1
... (19 Replies)
I am trying to use awk to match two files that are tab-delimited. When a match is found between file1 $1 and file2 $4, $4 in file2 is updated using the $2 value in file1. If no match is found then the next line is processed. Thank you :).
file1
uc001bwr.3 ADC
uc001bws.3 ADC... (4 Replies)
I am trying to create a cronjob that will run on startup that will look at a list.txt file to see if there is a later version of a database using database.txt as the source. The matching lines are written to output.
$1 in database.txt will be in list.txt as a partial match. $2 of database.txt... (2 Replies)
In the perl below I am trying to set/update the value of $14 (last field) in file2, using the matching NM_ in $12
or $9 in file2 with the NM_ in $2 of file1.
The lengths of $9 and $12 can be variable but what is consistent is the start pattern will always be NM_ and the end pattern is always
;... (4 Replies)
Trying to use awk to store the value of $5 in file1 in array x. That array x is then used to search $4 of file1 to find aa match (I use x to skip the header in file1). Since $4 can have multiple strings in it seperated by a , (comma), I split them and iterate througn each split looking for a match.... (2 Replies)
Discussion started by: cmccabe
2 Replies
LEARN ABOUT DEBIAN
shevek_ostring
shevek::ostring(3) Library Functions Manual shevek::ostring(3)NAME
shevek::ostring -
shevek::ostring is a C++ version of printf.
SYNOPSIS
#include <iostring.hh>
Public Member Functions
operator Glib::ustring () const
Use the result as a string.
Glib::ustring operator+ (Glib::ustring const &that) const
Use the result as a string.
ostring (Glib::ustring const &fmt)
Create a string with a constant format.
template<typename T1 > ostring (Glib::ustring const &fmt, T1 const &a1)
Create a string with one argument.
template<typename T1 , typename T2 > ostring (Glib::ustring const &fmt, T1 const &a1, T2 const &a2)
Create a string with two arguments.
template<typename T1 , typename T2 , typename T3 > ostring (Glib::ustring const &fmt, T1 const &a1, T2 const &a2, T3 const &a3)
Create a string with three arguments.
template<typename T1 , typename T2 , typename T3 , typename T4 > ostring (Glib::ustring const &fmt, T1 const &a1, T2 const &a2, T3 const
&a3, T4 const &a4)
Create a string with four arguments.
template<typename T1 , typename T2 , typename T3 , typename T4 , typename T5 > ostring (Glib::ustring const &fmt, T1 const &a1, T2 const
&a2, T3 const &a3, T4 const &a4, T5 const &a5)
Create a string with five arguments.
template<typename T1 , typename T2 , typename T3 , typename T4 , typename T5 , typename T6 > ostring (Glib::ustring const &fmt, T1 const
&a1, T2 const &a2, T3 const &a3, T4 const &a4, T5 const &a5, T6 const &a6)
Create a string with six arguments.
template<typename T1 , typename T2 , typename T3 , typename T4 , typename T5 , typename T6 , typename T7 > ostring (Glib::ustring const
&fmt, T1 const &a1, T2 const &a2, T3 const &a3, T4 const &a4, T5 const &a5, T6 const &a6, T7 const &a7)
Create a string with seven arguments.
template<typename T1 , typename T2 , typename T3 , typename T4 , typename T5 , typename T6 , typename T7 , typename T8 > ostring
(Glib::ustring const &fmt, T1 const &a1, T2 const &a2, T3 const &a3, T4 const &a4, T5 const &a5, T6 const &a6, T7 const &a7, T8 const
&a8)
Create a string with eight arguments.
template<typename T1 , typename T2 , typename T3 , typename T4 , typename T5 , typename T6 , typename T7 , typename T8 , typename T9 >
ostring (Glib::ustring const &fmt, T1 const &a1, T2 const &a2, T3 const &a3, T4 const &a4, T5 const &a5, T6 const &a6, T7 const &a7, T8
const &a8, T9 const &a9)
Create a string with nine arguments.
Friends
std::ostream & operator<< (std::ostream &s, ostring const &o)
Send the result to an ostream.
Detailed Description
shevek::ostring is a C++ version of printf.
It uses templates to allow expanding it to user-defined types, but it still uses a format string to make it better translatable. ostring
works on utf-8 strings (Glib::ustring). For std::string, use rostring.
Author
Generated automatically by Doxygen for libshevek from the source code.
libshevek Fri May 11 2012 shevek::ostring(3)
09-12-2017
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