I think the below will capture lines 2-6, but not line 1 (looks like 018328) is being captured by the regex. Is the syntax correct or is there a better way? Thank you .
perl
Code:
if ($FuncrefGene !~ /exonic/i && $GeneDetailrefGene=~/\D(\d+)/) { # capture the digits into $1
if ($1 > 11) { #
$1 ||= 0; # Give it a value of zero if no numeric value was found.
$classification = 'Likely Benign'; # Reclassify intronic variants (with distance only) based on distance to exon > 10 to Likely Benign
}
}
else {
if ($FuncrefGene !~ /exonic/i && $GeneDetailrefGene=~/(\D\d+)/) { # capture the digits after any non-digit into $1
if ($1 > 11) { #
$1 ||= 0; # Give it a value of zero if no numeric value was found.
$classification = 'Likely Benign'; # Reclassify intronic variants (with distance only) based on distance to exon > 10 to Likely Benign
}
}
else {
if ($FuncrefGene !~ /exonic/i) {
my ($transcript) = ($GeneDetailrefGene) =~ /(?:\.\d+[+*-])/; # Get a numeric value if exists using (.) and (+/-) and capture digits into $transcript.
$transcript ||= 0; # Give it a value of zero if no numeric value was found.
$classification = 'Likely Benign' if $transcript > 11; # Reclassify intronic variants (following c. nomenclature) to Likely Benign if distance greater than 10
}
}
i am using perl in win2000advanced server...
---------------------------
perl -version:
---------------------------
This is perl, v5.6.1 built for MSWin32-x86-multi-thread
(with 1 registered patch, see perl -V for more detail)
Copyright 1987-2001, Larry Wall
Binary build 638 provided by... (1 Reply)
Hi All
I have a Small Requiement
I wanted to replace all the Follwing lines as follows
Input:: file1
EVALUATE WS-TEMP-ATTR(15:1)
WHEN 'D'
MOVE DFHDARK TO WS-ATTR-COLOR
WHEN OTHER
MOVE DFHDFT ... (9 Replies)
Using Solaris 9 and 10.
What we want to do is set up global rules for our password files to restrict all users, not only new ones set up with the rules but also the ones that have been sitting on the system for years.
Is there a global way to force all users to change their password every 90... (1 Reply)
dears
i am using solaris 10
i am facing a problem when i make setup for solaris i choose the country egypt and i select the language north america
but i forget to do that the i found the date Jun written in arabic
i want to change character set to written in english
-rw-r--r-- 1 root ... (4 Replies)
Hi,
How to check if a string on file2 exactly matches with a part or complete string on file1, and return a match indicator based on some match rules.
1) only records on file1 with category A should be matched. for other category, the output match indicator should default to 'N'
2) on file2... (13 Replies)
Hy there!
Some time ago I encrypted the harddrive of my notebook.
Now, I can't remember it correctly.
I want to create a list with all possible combinations of the words I used (I still remember all the words....).
The password was created like this:
... (1 Reply)
Hi My requirement is very simple .
I juts need to delte some lines from a file.
here comes theactual scenario
I have some data in file like say
srinivasa prabhu kumar antony
srinivas king prabhu antony
srinivas prabhu king yar venkata
venkata kingson srinivas... (6 Replies)
please help solving the following. I have access to redhat linux cluster having 32gigs of ram.
I have duplicate ids for variable names, in the file 1,2 are duplicates;3,4 and 5 are duplicates;6 and 7 are duplicates. My objective is to use only the first occurrence of these duplicates.
Lookup... (4 Replies)
In the perl below, which does execute, I am having trouble with the else in Rule 3. The digit in f{8} is extracted and used to update f accordinly along with the value in f.
There can be either - * or + before the number that is extracted but the same logic applies, that is if the value is greater... (5 Replies)
Discussion started by: cmccabe
5 Replies
LEARN ABOUT SUSE
gendarme
Gendarme(Gendarme 2.6.2.0) Gendarme(Gendarme 2.6.2.0)
NAME
Gendarme - Rule-based code analysis for Mono.
FILE FORMATS
ignore-file
This file is used to filter out defects from gendarme reports. It uses a line oriented file format where the first characters of the
line control the interpretation of the line:
# - means that the line is a comment.
R: - if the full name of a rule to be filtered.
A: - is used to filter out an assembly (the extension can be omitted).
T: - is used to filter out a namespace qualified type name.
M: - is used to filter out a method. It must contain the full method name as it appears in the report.
rules.xml
This file is used in conjunction with the --set option to control and configure the rules used by Gendarme. It contains a set of
named rules (rule sets) and each rule set contains a list of rules. Rules have required from and include attributes, optional
exclude and applyTo attributes, and optional parameter child elements.
The from attribute is the path of a dll to load ("Gendarme.Rules.BadPractice.dll"). Relative paths are relative to the gendarme
executable.
The include attribute may be "*" to match every rule in the dll or a list of rule names separated by '|' ("WhizBangRule | MyRule").
The exclude attribute is a list of rule names separated by '|' ("IckyRule"). These will override any rules matched by the include
attribute.
The applyTo attribute may be "all", "visible", or "nonvisible". If it is all (the default) then all types in the assemblies are
checked, if it is visible then only the externally visible types are checked, if it is nonvisible then only the internally visible
types are checked.
The parameter child element is used to customize the behavior of a rule within a dll. It has three required attributes: rule, prop-
erty, and value. rule is the name of the applicable rule ("AvoidSmallNamespaceRule"), property is the name of a public property in
the rule ("Minimum"), value is the value to assign to the property ("10").
gendarme.exe.config
Used by debug versions of Gendarme to enable logging for rules. A config file will be generated automatically by the make file. To
enable logging for a rule edit the config file, add a switch using the rule's name, and set the value to 1.
COPYRIGHT
Copyright (C) 2005-2009 Novell, Inc (http://www.novell.com)
MAILING LISTS
Mailing lists are listed at the http://groups.google.com/group/gendarme
WEB SITE
http://www.mono-project.com/Gendarme
SEE ALSO gendarme(1)
Gendarme(Gendarme 2.6.2.0)
09-11-2017
.