I think the below will capture lines 2-6, but not line 1 (looks like 018328) is being captured by the regex. Is the syntax correct or is there a better way? Thank you .
perl
Code:
if ($FuncrefGene !~ /exonic/i && $GeneDetailrefGene=~/\D(\d+)/) { # capture the digits into $1
if ($1 > 11) { #
$1 ||= 0; # Give it a value of zero if no numeric value was found.
$classification = 'Likely Benign'; # Reclassify intronic variants (with distance only) based on distance to exon > 10 to Likely Benign
}
}
else {
if ($FuncrefGene !~ /exonic/i && $GeneDetailrefGene=~/(\D\d+)/) { # capture the digits after any non-digit into $1
if ($1 > 11) { #
$1 ||= 0; # Give it a value of zero if no numeric value was found.
$classification = 'Likely Benign'; # Reclassify intronic variants (with distance only) based on distance to exon > 10 to Likely Benign
}
}
else {
if ($FuncrefGene !~ /exonic/i) {
my ($transcript) = ($GeneDetailrefGene) =~ /(?:\.\d+[+*-])/; # Get a numeric value if exists using (.) and (+/-) and capture digits into $transcript.
$transcript ||= 0; # Give it a value of zero if no numeric value was found.
$classification = 'Likely Benign' if $transcript > 11; # Reclassify intronic variants (following c. nomenclature) to Likely Benign if distance greater than 10
}
}
i am using perl in win2000advanced server...
---------------------------
perl -version:
---------------------------
This is perl, v5.6.1 built for MSWin32-x86-multi-thread
(with 1 registered patch, see perl -V for more detail)
Copyright 1987-2001, Larry Wall
Binary build 638 provided by... (1 Reply)
Hi All
I have a Small Requiement
I wanted to replace all the Follwing lines as follows
Input:: file1
EVALUATE WS-TEMP-ATTR(15:1)
WHEN 'D'
MOVE DFHDARK TO WS-ATTR-COLOR
WHEN OTHER
MOVE DFHDFT ... (9 Replies)
Using Solaris 9 and 10.
What we want to do is set up global rules for our password files to restrict all users, not only new ones set up with the rules but also the ones that have been sitting on the system for years.
Is there a global way to force all users to change their password every 90... (1 Reply)
dears
i am using solaris 10
i am facing a problem when i make setup for solaris i choose the country egypt and i select the language north america
but i forget to do that the i found the date Jun written in arabic
i want to change character set to written in english
-rw-r--r-- 1 root ... (4 Replies)
Hi,
How to check if a string on file2 exactly matches with a part or complete string on file1, and return a match indicator based on some match rules.
1) only records on file1 with category A should be matched. for other category, the output match indicator should default to 'N'
2) on file2... (13 Replies)
Hy there!
Some time ago I encrypted the harddrive of my notebook.
Now, I can't remember it correctly.
I want to create a list with all possible combinations of the words I used (I still remember all the words....).
The password was created like this:
... (1 Reply)
Hi My requirement is very simple .
I juts need to delte some lines from a file.
here comes theactual scenario
I have some data in file like say
srinivasa prabhu kumar antony
srinivas king prabhu antony
srinivas prabhu king yar venkata
venkata kingson srinivas... (6 Replies)
please help solving the following. I have access to redhat linux cluster having 32gigs of ram.
I have duplicate ids for variable names, in the file 1,2 are duplicates;3,4 and 5 are duplicates;6 and 7 are duplicates. My objective is to use only the first occurrence of these duplicates.
Lookup... (4 Replies)
In the perl below, which does execute, I am having trouble with the else in Rule 3. The digit in f{8} is extracted and used to update f accordinly along with the value in f.
There can be either - * or + before the number that is extracted but the same logic applies, that is if the value is greater... (5 Replies)
Discussion started by: cmccabe
5 Replies
LEARN ABOUT CENTOS
file::find::rule::perl
File::Find::Rule::Perl(3) User Contributed Perl Documentation File::Find::Rule::Perl(3)NAME
File::Find::Rule::Perl - Common rules for searching for Perl things
SYNOPSIS
use File::Find::Rule ();
use File::Find::Rule::Perl ();
# Find all Perl files smaller than 10k
my @files = File::Find::Rule->perl_file
->size('<10Ki')
->in('dir');
# Locate all the modules that PAUSE will index
my @mod = File::Find::Rule->no_index
->perl_module
->in('My-Distribution');
DESCRIPTION
I write a lot of things that muck with Perl files. And it always annoyed me that finding "perl files" requires a moderately complex
File::Find::Rule pattern.
File::Find::Rule::Perl provides methods for finding various types Perl-related files, or replicating search queries run on a distribution
in various parts of the CPAN ecosystem.
METHODS
perl_module
The "perl_module" rule locates perl modules. That is, files that are named "*.pm".
This rule is equivalent to "->"file->name( '*.pm' )> and is included primarily for completeness.
perl_test
The "perl_test" rule locates perl test scripts. That is, files that are named "*.t".
This rule is equivalent to "->"file->name( '*.t' )> and is included primarily for completeness.
perl_installer
The "perl_installer" rule locates perl distribution installers. That is, it locates "Makefile.PL" and "Build.PL" files.
perl_script
The "perl_script" rule locates perl scripts.
This is any file that ends in .pl, or any files without extensions that have a perl "hash-bang" line.
perl_file
The "perl_file" rule locates all files containing Perl code.
This includes all the files matching the above "perl_module", "perl_test", "perl_installer" and "perl_script" rules.
no_index
# Provide the rules directly
$rule->no_index(
directory => [ 'inc', 't', 'examples' ],
file => [ 'Foo.pm', 'lib/Foo.pm' ],
);
# Provide a META.yml to use
$rule->no_index( 'META.yml' );
# Provide a dist root directory to look for a META.yml in
$rule->no_index( 'My-Distribution' );
# Automatically pick up a META.yml from the target directory
$rule->no_index->in( 'My-Distribution' );
The "no_index" method applies a set of rules as per the no_index section in a "META.yml" file.
SUPPORT
Bugs should always be submitted via the CPAN bug tracker
<http://rt.cpan.org/NoAuth/ReportBug.html?Queue=File-Find-Rule-Perl>
For other issues, contact the maintainer
AUTHOR
Adam Kennedy <adamk@cpan.org>
SEE ALSO
<http://ali.as/>, File::Find::Rule, File::Find::Rule::PPI
COPYRIGHT
Copyright 2006 - 2012 Adam Kennedy.
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
The full text of the license can be found in the LICENSE file included with this module.
perl v5.16.3 2012-10-31 File::Find::Rule::Perl(3)
09-11-2017
.