Thanks RudiC!
I was too excited to notice the problem, which is a serious bug for sure.
Seems the files order must be changed because of the similarity of the _R1/R2.fq.gz file names.
However, if I do not change the files order, how to fix this bug if possible, Please?
Thanks again!
Hi,
I want to find a file / directory with the name xxxxCELLxxx in the given path. The CELL is can be either in a UPPER or lower case.
Thanks (4 Replies)
Match column 3 in file1 to column 1 in file 2 and replace with column 2 from file2
file 1 sample
SNDK 80004C101 AT
XLNX 983919101 BB
NETL 64118B100 BS
AMD 007903107 CC
KLAC 482480100 DC
TER 880770102 KATS
ATHR 04743P108 KATS... (7 Replies)
Hi all,
I have 2 files, the first one containing a list of ids and the second one is a master file. I want to search each id from the first file from the 5th col in the second file. The 5th column in master file has values separated by ';', if not a single value is present.
Each id must occur... (2 Replies)
I am looking at the NR==FNR posts and trying to use them to achieve the following but I am not getting it.
I have 2 files. I want to match column 8 in file 1 with column 2 in file 2. When they match I want to replace column 9 in file 1 with column 1 in file 2.
This is and extract from file 1
... (5 Replies)
Hello gurus,
I have a database of possible primary signal strings
pp22
pt22dx
pp22dx
jty2234
Also I have a list of scrambled signals which has a shorter string and a longer string separated by // (double slash ). Always the shorter string of a scrambled signal will have the primary... (6 Replies)
hi
I have 2 file with more than 10 columns for both
1st file
apple,0,0,0......
orange,1,2,3.....
mango,2,4,5.....
2nd file
apple,2,3,4,5,6,7...
orange,2,3,4,5,6,8...
watermerlon,2,3,4,5,6,abc...
mango,5,6,7,4,6,def.... (1 Reply)
hi all,
trying this using shell/bash with sed/awk/grep
I have two files, one containing one column, the other containing multiple columns (comma delimited).
file1.txt
abc12345
def12345
ghi54321
...
file2.txt
abc1,text1,texta
abc,text2,textb
def123,text3,textc
gh,text4,textd... (6 Replies)
Discussion started by: shogun1970
6 Replies
LEARN ABOUT OSX
trim
textutil::trim(n) Text and string utilities, macro processing textutil::trim(n)
__________________________________________________________________________________________________________________________________________________NAME
textutil::trim - Procedures to trim strings
SYNOPSIS
package require Tcl 8.2
package require textutil::trim ?0.7?
::textutil::trim::trim string ?regexp?
::textutil::trim::trimleft string ?regexp?
::textutil::trim::trimright string ?regexp?
::textutil::trim::trimPrefix string prefix
::textutil::trim::trimEmptyHeading string
_________________________________________________________________DESCRIPTION
The package textutil::trim provides commands that trim strings using arbitrary regular expressions.
The complete set of procedures is described below.
::textutil::trim::trim string ?regexp?
Remove in string any leading and trailing substring according to the regular expression regexp and return the result as a new
string. This is done for all lines in the string, that is any substring between 2 newline chars, or between the beginning of the
string and a newline, or between a newline and the end of the string, or, if the string contain no newline, between the beginning
and the end of the string. The regular expression regexp defaults to "[ \t]+".
::textutil::trim::trimleft string ?regexp?
Remove in string any leading substring according to the regular expression regexp and return the result as a new string. This apply
on any line in the string, that is any substring between 2 newline chars, or between the beginning of the string and a newline, or
between a newline and the end of the string, or, if the string contain no newline, between the beginning and the end of the string.
The regular expression regexp defaults to "[ \t]+".
::textutil::trim::trimright string ?regexp?
Remove in string any trailing substring according to the regular expression regexp and return the result as a new string. This apply
on any line in the string, that is any substring between 2 newline chars, or between the beginning of the string and a newline, or
between a newline and the end of the string, or, if the string contain no newline, between the beginning and the end of the string.
The regular expression regexp defaults to "[ \t]+".
::textutil::trim::trimPrefix string prefix
Removes the prefix from the beginning of string and returns the result. The string is left unchanged if it doesn't have prefix at
its beginning.
::textutil::trim::trimEmptyHeading string
Looks for empty lines (including lines consisting of only whitespace) at the beginning of the string and removes it. The modified
string is returned as the result of the command.
BUGS, IDEAS, FEEDBACK
This document, and the package it describes, will undoubtedly contain bugs and other problems. Please report such in the category textutil
of the Tcllib SF Trackers [http://sourceforge.net/tracker/?group_id=12883]. Please also report any ideas for enhancements you may have for
either package and/or documentation.
SEE ALSO
regexp(n), split(n), string(n)
KEYWORDS
prefix, regular expression, string, trimming
CATEGORY
Text processing
textutil 0.7 textutil::trim(n)