Hi,
I have a file with 3 columns in it that are comma separated and it has about 5000 lines. What I want to do is find the most common value in column 3 using awk or a shell script or whatever works! I'm totally stuck on how to do this.
e.g.
value1,value2,bob
value1,value2,bob... (12 Replies)
Hi,
I have two text files.The first and the 2nd file have data in the same format
For e.g. The first file has
BOOKS COUNT: 40
BOOKS AUTHOR1 SUM:1018 MAX:47 MIN:1 AVG:25.45
BOOKS AUTHOR3 SUM:181 MAX:48 MIN:3 AVG:18.1
Note:Read it as Table columnname sum(column) max(column) min(column)... (1 Reply)
I will be performing a task on several directories, each containing a large number of files (2500+) that follow a regular naming convention:
YYYY_MM_DD_XX.foo_bar.A.B.some_different_stuff.EXT
What I would like to do is automatically discover the part of the filenames that are common to all... (1 Reply)
I currently have publication lists for ~3 dozen faculty members. I need to find out how many publications are in common across all faculty members - person 1 with person 2, person 1 with person 3, person 2 with person 3, person 1 with both person 2 and person 3, etc.
One person may have
Last1,... (5 Replies)
Hello,
Suppose I have these 2 tab delimited files, where the second column in first file contains matching values from first column of the second file, I would like to get an output like this:
File A
1 A
2 B
3 C
File B
A Apple
C Cinnabon
B Banana
I would like... (1 Reply)
Dear All,
I have 2 files. If field 1, 2, 4 and 5 matches in both file1 and file2, I want to print the whole line of file1 and file2 one after another in my output file.
File1:
sc2/80 20 . A T 86 F=5;U=4
sc2/60 55 . G T ... (1 Reply)
Hello, I would like to know what is the three most abundant substrings of length 6 from col2. The file is quite large and looks like this
col1 col2
EN03 typehellobyedogcatcatdog
EN09 typehellobyebyebyebye
EN08 dogcatcatdogbyebyebyebye
EN09 catcattypehellobyebyebyebye... (9 Replies)
Discussion started by: verse123
9 Replies
LEARN ABOUT DEBIAN
ace::sequence::transcript
Ace::Sequence::Transcript(3pm) User Contributed Perl Documentation Ace::Sequence::Transcript(3pm)NAME
Ace::Sequence::Transcript - Simple "Gene" Object
SYNOPSIS
# open database connection and get an Ace::Object sequence
use Ace::Sequence;
# get a megabase from the middle of chromosome I
$seq = Ace::Sequence->new(-name => 'CHROMOSOME_I,
-db => $db,
-offset => 3_000_000,
-length => 1_000_000);
# get all the transcripts
@genes = $seq->transcripts;
# get the exons from the first one
@exons = $genes[0]->exons;
# get the introns
@introns = $genes[0]->introns
# get the CDSs (NOT IMPLEMENTED YET!)
@cds = $genes[0]->cds;
DESCRIPTION
Ace::Sequence::Gene is a subclass of Ace::Sequence::Feature. It inherits all the methods of Ace::Sequence::Feature, but adds the ability
to retrieve the annotated introns and exons of the gene.
OBJECT CREATION
You will not ordinarily create an Ace::Sequence::Gene object directly. Instead, objects will be created in response to a transcripts()
call to an Ace::Sequence object.
OBJECT METHODS
Most methods are inherited from Ace::Sequence::Feature. The following methods are also supported:
exons()
@exons = $gene->exons;
Return a list of Ace::Sequence::Feature objects corresponding to annotated exons.
introns()
@introns = $gene->introns;
Return a list of Ace::Sequence::Feature objects corresponding to annotated introns.
cds()
@cds = $gene->cds;
Return a list of Ace::Sequence::Feature objects corresponding to coding sequence. THIS IS NOT YET IMPLEMENTED.
relative()
$relative = $gene->relative;
$gene->relative(1);
This turns on and off relative coordinates. By default, the exons and intron features will be returned in the coordinate system used
by the gene. If relative() is set to a true value, then coordinates will be expressed as relative to the start of the gene. The first
exon will (usually) be 1.
SEE ALSO
Ace, Ace::Object, Ace::Sequence,Ace::Sequence::Homol, Ace::Sequence::Feature, Ace::Sequence::FeatureList, GFF
AUTHOR
Lincoln Stein <lstein@cshl.org> with extensive help from Jean Thierry-Mieg <mieg@kaa.crbm.cnrs-mop.fr>
Copyright (c) 1999, Lincoln D. Stein
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 168:
You forgot a '=back' before '=head1'
perl v5.14.2 2001-05-22 Ace::Sequence::Transcript(3pm)