I am using slurm to send file to make calculation on a server at my university.
The time limit for these calculation is 5 days but sometimes it is not enough. For this reason I need a clean up function that before the calculation ends copy the unfinished calculation file ( in order to restart them later). I trapped this function with a SIGUSR2 signal and I used the command --signal=SIGUSR2@600 to launch the signal 10 minutes before the end of the calculation but it doesn't seems to work. You will find following the code:
Hi All,
I need to pass a variable to perl script from bash script, where in perl i am using if condition. Here is the cmd what i am using in perl
FROM_DATE="06/05/2008"
TO_DATE="07/05/2008"
"perl -ne ' print if ( $_ >="$FROM_DATE" && $_ <= "$TO_DATE" ) ' filename"
filename has... (10 Replies)
hi,
i have a script that runs on bash and would like to run it on a machine that has csh and bash. the default setting on that machine is csh. i dont want to change my code to run it with a csh shell. is there any way i can run the script (written in bash) on this machine? in other words is there... (3 Replies)
What is the simplest function I can use to signal an interrupt from kernel module to user space. I knw the usr app pid in my module.
Also can someone explain the parameters in kill_fasync and send_sig (0 Replies)
Hi,
I'm writing shell scripts to handle incoming and outgoing automated sftp transfers between a local server and various remote servers belonging to different organizations.
I'm wondering if there are any recommended or "best practices" for signalling the end of a ftp file transmission... (2 Replies)
I have the following code and for some reason when I call the program using
/home/tcdata/tatsh/trunk/hstmy/bin/bash/raytrac.bash --cmod=jcdint.cmod
I get
hasArgument =
hasArgument = true
Somehow the array element is returning even though I have not chosen the option.
... (41 Replies)
# check host value regex='^(||1|2|25)(\.(||1|2|25)){3}$' if ')" != "" ]; then if ]; then echo host $host not found exit 4 fi elif ]; then echo $host is an invalid host address exit 5 fi
espeacailly the top regex part?
---------- Post updated at 06:58 PM ---------- Previous update was... (1 Reply)
In the bash below I am asking the user for a panel and reading that into bed. Then asking the user for a file and reading that into file1.Is the grep in bold the correct way to apply the selected panel to the file? I am getting a syntax error. Thank you :)
... (4 Replies)
How to run several bash commands put in bash command line without needing and requiring a script file.
Because I'm actually a windows guy and new here so for illustration is sort of :
$ bash "echo ${PATH} & echo have a nice day!"
will do output, for example:... (4 Replies)
Hi,
I am new in bash scripting. In my work, I provide support to several users and when I connect to their computers I use the same admin and password, so I am trying to create a script that will only ask me for the IP address and then connect to the computer without having me to type the user... (5 Replies)
In Bash shell - the ps -ef shows only the /bin/bash but the script name is not displayed ? Is there any way to get the script names for the process command ?
--- Post updated at 08:39 AM ---
in KSH (Korn Shell), my command output shows the script names but when run in the Bash Shell... (3 Replies)
Discussion started by: i4ismail
3 Replies
LEARN ABOUT DEBIAN
psize
PSIZE(1) PDB2PQR Manual PSIZE(1)NAME
psize - Get dimensions and other information from PQR files
SYNOPSIS
psize [--cfact=value] [--fadd=value] [--space=value] [--gememfac=value] [--gememceil=value] [--ofrac=value] [--redfac=value] {pqrfile}
psize {--help | -h}
DESCRIPTION
psize derives information from PQR files to preprare the models of proteins and chemicals for electrostatics calculations. The tool
calculates dimensions for coarse and fine grids, grid spacings, box size and estimates the memory required to perform an electrostatics
calculation.
The calculation of this information can be influenced by giving constraints to psize as parameters.
OPTIONS
psize accepts the following options:
--help, -h
Print a help message and exit.
--cfact=value
Factor by which to expand the molecule dimensions to get the coarse grid dimensions
--fadd=value
Amount to add to the molecule dimensions to get the fine grid dimensions.
--space=value
Desired fine mesh resolution.
--gememfac=value
Number of bytes per grid point required for sequential MG calculation.
--gememceil=value
Maximum MB allowed for sequential MG calculation. Adjust this to force the script to perform faster calculations (which require more
parallelism).
--ofrac=value
Overlap factor between mesh partitions.
--redfac=value
Maximum factor by which a domain dimension can be reduced during focusing.
SEE ALSO apbs(1), pdb2pqr(1)AUTHOR
Manuel Prinz <debian@pinguinkiste.de>
Wrote this manpage for the Debian System.
COPYRIGHT
Copyright (C) 2008 Manuel Prinz
psize 2008-06-04 PSIZE(1)