Match Columns in one file and extract columns from another file
Kindly help merging information from two files with the following data structure.
I want to match for the CHR-SNP in Foo and get the columns that match from CHROM-rsID
Fields 1 & 2 of foo may have duplicates, however, a joint key of Fields $1$2$3$4 is unique.
Also would be helpful to clean up the file column delimiter to make sure spaces (more than one)are converted to single tab.
awk preferred.
Many thanks
~GH
File foo:
File bar:
required file foobar
Hi,
In ksh, I have a file with similar rows as follows:
Department = 1234 G/L Asset Acct No = 12.0000. 2/29/2008
Department = 1234 G/L Asset Acct No = 13.0000. 3/29/2008.
I want to create a new text file that contains only the numbers and date:
1234 12.0000. 2/29/2008
1234 13.0000. ... (16 Replies)
I have huge fixed width, text file in unix box and I need to extract columns found between the width 105 and 200 and output it to a new file.
Can anyone tell me how to extract it?
Thanks for your help. (1 Reply)
hi experts
lets say my format file is B
B
=========
column no,name,type,length
1,ee,N,12
3,hj,N.4
4,kl,N,5
source file
========
d e f g h i
5 8 9 7 6 5
1 3 4 5 6 6 (2 Replies)
Hi All,
Could you please help me with following:
I have to parse a .csv file.
For example: If the csv file contains 3 columns, then i have to print the column names. The field separator is (comma).
example.csv (contains 2 lines as follows)
This is,a test file, for validation... (2 Replies)
Hi All,
I have to match each row in file 1 with 1st row in file 2 and print the corresponding column from file2. I am trying to use an awk script to do this. For example
cat File1
X1
X3
X4
cat File2
ID X1 X2 X3 X4
A 1 6 2 1
B 2 7 3 3
C 3 8 4 1
D 4 9 1 1 (3 Replies)
Hi all, I know this sounds suspiciously like a homework course; but, it is not.
My goal is to take a file, and match my "ID" column to the "Date" column, if those conditions are true, add the total number of minutes worked and place it in this file, while not printing the original rows that I... (6 Replies)
Hello All,
I have a requirement in which i will be given a sql query as input in a file with dynamic number of columns. For example some times i will get 5 columns, some times 8 columns etc up to 20 columns.
So my requirement is to generate a output query which will have 20 columns all the... (7 Replies)
Hi, I have been looking everywhere for an example so I can try and do this myself but I am having difficulty. I have 2 large files of different sizes and if the pattern in the 3rd column in file 1 is in "any" column in file 2 I want to print all of the line in file 1 and append that line with the... (5 Replies)
I have a comma delimited file as per the one below and I am currently extracting the values in 2 columns (COL1 & COL6) to produce a smaller trimmed down version of the file which only contains the columns we need;
COL1,COL2,COL3,COL4,COL5,COL6,COL7,COL8,COL9... (1 Reply)
Discussion started by: Ads89
1 Replies
LEARN ABOUT MOJAVE
locale::codes::langfam5.18
Locale::Codes::LangFam(3pm) Perl Programmers Reference Guide Locale::Codes::LangFam(3pm)NAME
Locale::Codes::LangFam - standard codes for language extension identification
SYNOPSIS
use Locale::Codes::LangFam;
$lext = code2langfam('apa'); # $lext gets 'Apache languages'
$code = langfam2code('Apache languages'); # $code gets 'apa'
@codes = all_langfam_codes();
@names = all_langfam_names();
DESCRIPTION
The "Locale::Codes::LangFam" module provides access to standard codes used for identifying language families, such as those as defined in
ISO 639-5.
Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639-5
language family codes will be used.
SUPPORTED CODE SETS
There are several different code sets you can use for identifying language families. A code set may be specified using either a name, or a
constant that is automatically exported by this module.
For example, the two are equivalent:
$lext = code2langfam('apa','alpha');
$lext = code2langfam('apa',LOCALE_LANGFAM_ALPHA);
The codesets currently supported are:
alpha
This is the set of three-letter (lowercase) codes from ISO 639-5 such as 'apa' for Apache languages.
This is the default code set.
ROUTINES
code2langfam ( CODE [,CODESET] )
langfam2code ( NAME [,CODESET] )
langfam_code2code ( CODE ,CODESET ,CODESET2 )
all_langfam_codes ( [CODESET] )
all_langfam_names ( [CODESET] )
Locale::Codes::LangFam::rename_langfam ( CODE ,NEW_NAME [,CODESET] )
Locale::Codes::LangFam::add_langfam ( CODE ,NAME [,CODESET] )
Locale::Codes::LangFam::delete_langfam ( CODE [,CODESET] )
Locale::Codes::LangFam::add_langfam_alias ( NAME ,NEW_NAME )
Locale::Codes::LangFam::delete_langfam_alias ( NAME )
Locale::Codes::LangFam::rename_langfam_code ( CODE ,NEW_CODE [,CODESET] )
Locale::Codes::LangFam::add_langfam_code_alias ( CODE ,NEW_CODE [,CODESET] )
Locale::Codes::LangFam::delete_langfam_code_alias ( CODE [,CODESET] )
These routines are all documented in the Locale::Codes::API man page.
SEE ALSO
Locale::Codes
The Locale-Codes distribution.
Locale::Codes::API
The list of functions supported by this module.
http://www.loc.gov/standards/iso639-5/id.php
ISO 639-5 .
AUTHOR
See Locale::Codes for full author history.
Currently maintained by Sullivan Beck (sbeck@cpan.org).
COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck
This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
perl v5.18.2 2013-11-04 Locale::Codes::LangFam(3pm)