awk to print match or non-match and select fields/patterns for non-matches
In the awk below I am trying to output those lines that Match between file1 and file2, those Missing in file1, and those missing in file2. Using each $1,$2,$4,$5 value as a key to match on, that is if those 4 fields are found in both files the match, but if those 4 fields are not found then missing in whatever file. That seems to work, but what I can't seem to do in print the values for the patterns in bold for only the missing lines. The patterns are always in the second line so I set it to FNR==2 and I am also trying to print $6 in FNR==1 in my attempt to capture these is in bold in the awk.
file1
file2
desired output
awk
current output
Last edited by cmccabe; 08-03-2017 at 02:22 PM..
Reason: fixed format
Dear all,
I need to search multiple patterns and then I need to print their respective next lines. For an example, in the below table, I will look for 3 different patterns :
1) # ATC_Codes:
2) # Generic_Name:
3) # Drug_Target_1_Gene_Name:
#BEGIN_DRUGCARD DB00001
# AHFS_Codes:... (3 Replies)
Hello everyone,
Maybe somebody could help me with an awk script.
I have this input (field separator is comma ","):
547894982,M|N|J,U|Q|P,98,101,0,1,1
234900027,M|N|J,U|Q|P,98,101,0,1,1
234900023,M|N|J,U|Q|P,98,54,3,1,1
234900028,M|H|J,S|Q|P,98,101,0,1,1
234900030,M|N|J,U|F|P,98,101,0,1,1... (2 Replies)
Hi,
i have been trying to extract multiple lines based on two different patterns as below:-
file1
@jkm|kdo|aas012|192.2.3.1 blablbalablablkabblablabla
sjfdsakfjladfjefhaghfagfkafagkjsghfalhfk
fhajkhfadjkhfalhflaffajkgfajkghfajkhgfkf
jahfjkhflkhalfdhfwearhahfl
@jkm|sdf|wud08q|168.2.1.3... (8 Replies)
Trying to use awk to find a keyword and return the matches in the row, but also $1 and $2, which are the unique id's, but they only appear once. Thank you :).
file
name 31 Index Chromosomal Position Gene Inheritance
122 2106725 TSC2 AD
124 2115481 TSC2 AD
121 2105400 TSC2 AD... (6 Replies)
Trying to use awk to match the contents of each line in file1 with $5 in file2. Both files are tab-delimited and there may be a space or special character in the name being matched in file2, for example in file1 the name is BRCA1 but in file2 the name is BRCA 1 or in file1 name is BCR but in file2... (6 Replies)
Hi
I need to egrep patterns in a file and limit number of matches to print for each matched pattern.
-m10 option is not working out in my sun solaris 5.10
Please guide me the options to achieve.
if i do head -10 , i wont be getting all pattern match results as output since for a... (10 Replies)
I've written an awk script to compare two fields in two different files and then print portions of each file on the same line when matched. It works reasonably well, but every now and again, I notice some errors and cannot seem to figure out what the issue may be and am turning to you for help.
... (2 Replies)
In the awk below I am trying to use the file1 as a match to file2. In file2 the contents of $5,&6,and $7 (always tab-delimited) and are copied to the output under the header Quality metrics. The below executes but the output is empty. I have added comments to help and show my thinking. Thank you... (0 Replies)
I need to print field and the next one if field matches 'patternA' and also print 'patternB' fields.
echo "some output" | awk '{for(i=1;i<=NF;i++){if($i ~ /patternA/){print $i, $(i+1)}elif($i ~ /patternB/){print $i}}}'
This code returnes me 'syntax error'. Pls advise how to do properly. (2 Replies)