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Full Discussion: awk to capture lines that meet either condition
Top Forums Shell Programming and Scripting awk to capture lines that meet either condition Post 303001371 by Corona688 on Wednesday 2nd of August 2017 12:14:53 PM
Old 08-02-2017
By adding print V["CI"] to the code I discovered that it thinks CI is 0.05:0.895574,0.95:1.16322

Which makes sense, as the input is only split on equals.

So I've added code to split the CI value specially:

Code:
awk -F'[\t;]' '              # define FS as tab and ;
   {
     split(x,V)
     for(i=1; i<=NF; i++) { # create loop i (which is each line) and iterate th$
       split($i,F,/=/)      # each portion (in green) of the line with the patt$
       V[F[1]]=F[2]         # set each split in array F equal to array V (defin$
     }

     split(V["CI"], A, ":"); # A[1]=0.05, A[2]=0.895574,0.95, etc
     V["CI"]=A[1]; # V["CI"]=0.95
   }
   (V["SVTYPE"]=="CNV"    && V["CI"]+0 < 1.9) ||     # define V for CNV   - not$
   (V["SVTYPE"]=="Fusion" && V["READ_COUNT"]+0 > 10) # define V for Fusion
' inputfile

This User Gave Thanks to Corona688 For This Post:
cmccabe
 

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LEARN ABOUT REDHAT

tzselect

TZSELECT(8)						      System Manager's Manual						       TZSELECT(8)

NAME

       tzselect - select a time zone

SYNOPSIS

       tzselect

DESCRIPTION

       The  tzselect program asks the user for information about the current location, and outputs the resulting time zone description to standard
       output.	The output is suitable as a value for the TZ environment variable.

       All interaction with the user is done via standard input and standard error.

ENVIRONMENT VARIABLES

       AWK    Name of a Posix-compliant awk program (default: awk).

       TZDIR  Name of the directory containing time zone data files (default: /usr/local/etc/zoneinfo).

FILES

       TZDIR/iso3166.tab
	      Table of ISO 3166 2-letter country codes and country names.

       TZDIR/zone.tab
	      Table of country codes, latitude and longitude, TZ values, and descriptive comments.

       TZDIR/TZ
	      Time zone data file for time zone TZ.

EXIT STATUS

       The exit status is zero if a time zone was successfully obtained from the user, nonzero otherwise.

SEE ALSO

       newctime(3), tzfile(5), zdump(8), zic(8)

																       TZSELECT(8)
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