Perl to update field based on a specific set of rules
In the perl below, which does execute, I am having trouble with the else in Rule 3. The digit in f{8} is extracted and used to update f[55] accordinly along with the value in f[13].
There can be either - * or + before the number that is extracted but the same logic applies, that is if the value is greater than 10 and f[13] is greater than 0.01 f[55] is Likely Benign, if the value is less than 10
and f[13] is less than 0.01 f[55] is VUS in. It is possible for f[13] to be . (dot) but that is the same as zero. However, currently the value does not seem to be extracted by the perl below and I
get different output then the desired. If I comment this rule out it fixes some of the lines but causes other lines to be incorrect. I am not sure what is causing the issue or how to fix it. Thank you .
I added a description to explain each line of the output and what should be happening, which currently is not .
file
desired output tab-delimeted
description
perl
current output
Last edited by cmccabe; 07-21-2017 at 09:50 AM..
Reason: fixed format, added current output
Hi
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CONTENT_STORAGE PERCENTAGE FLAG:
/storage_01 64% 0
/storage_02 17% 1
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#!/bin/sh
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Hi,
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