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Top Forums Programming Appending a column in xlsx file using Python Post 303000079 by nans on Tuesday 4th of July 2017 04:13:51 AM
Old 07-04-2017
okay, I'm getting there now slowly! But why isn't it saving the results to the excel sheet ?

Code:
     for sheet_root, sheet_dirs, sheet_files in os.walk(sheet_directory):
        for sheet_file in sheet_files:
            if sheet_file.endswith('.xlsx'):
                #print(sheet_file)
                sheet_xl_file = os.path.join(sheet_root, sheet_file)
                wb = load_workbook(sheet_xl_file, data_only=True)
                ws = wb.get_sheet_by_name('Unannotated')
                pos_col_no = 'E'
                alt_col_no = 'G'
                ref_col_no = 'F'
                score_col_no = 'V'
                row_no = 4
                NG = ws[score_col_no + str(row_no)]
                #print row_no
                cell_pos = ws[pos_col_no + str(row_no)]
                cell_ref = ws[ref_col_no + str(row_no)]
                cell_alt = ws[alt_col_no + str(row_no)]
                cpos = Scores(POS=cell_pos.value, ALT=cell_alt.value, REF=cell_ref.value)
                print cpos  ##prints only row E4:G4:F4
                #while cpos:
                while row_no <=10:
                    if (dict_pos.has_key(cpos)):
                        NG = dict_pos[cpos]
                        print dict_pos[cpos]
                    else:
                        NG = 'Unknown_' + datetime.now().strftime("%B") + datetime.now().strftime("%Y")
                    row_no += 1
                    #print row_no
                    cell_pos = ws[pos_col_no + str(row_no)]
                    cell_ref = ws[ref_col_no + str(row_no)]
                    cell_alt = ws[alt_col_no + str(row_no)]
                    cpos = Scores(POS=cell_pos.value, ALT=cell_alt.value, REF=cell_ref.value)
                    print cpos
                    if (dict_pos.has_key(cpos)):
                        NG = dict_pos[cpos]
                    else:
                        NG = 'Unknown_' + datetime.now().strftime("%B") + datetime.now().strftime("%Y")
                        print NG
                wb.save(sheet_xl_file)
process_xl_sheets()

Code:
/usr/bin/python2.7 annotate_new_dict.py
Scores(POS=u'73', ALT=u'G', REF=u'A')
11
Scores(POS=u'114', ALT=u'T', REF=u'C')
1
Scores(POS=u'263', ALT=u'G', REF=u'A')
Unknown_July2017
Scores(POS=u'309', ALT=u'T', REF=u'C')
Unknown_July2017
Scores(POS=u'497', ALT=u'T', REF=u'C')
Unknown_July2017
Scores(POS=u'513', ALT=u'G', REF=u'GCA')
Unknown_July2017
Scores(POS=u'750', ALT=u'G', REF=u'A')
1
Scores(POS=u'1189', ALT=u'C', REF=u'T')

Process finished with exit code 0

 

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MB_STRTOLOWER(3)							 1							  MB_STRTOLOWER(3)

mb_strtolower - Make a string lowercase

SYNOPSIS
string mb_strtolower (string $str, [string $encoding = mb_internal_encoding()]) DESCRIPTION
Returns $str with all alphabetic characters converted to lowercase. PARAMETERS
o $str - The string being lowercased. o $encoding -The $encoding parameter is the character encoding. If it is omitted, the internal character encoding value will be used. RETURN VALUES
$str with all alphabetic characters converted to lowercase. UNICODE
For more information about the Unicode properties, please see http://www.unicode.org/unicode/reports/tr21/. By contrast to strtolower(3), 'alphabetic' is determined by the Unicode character properties. Thus the behaviour of this function is not affected by locale settings and it can convert any characters that have 'alphabetic' property, such as A-umlaut (A). EXAMPLES
Example #1 mb_strtolower(3) example <?php $str = "Mary Had A Little Lamb and She LOVED It So"; $str = mb_strtolower($str); echo $str; // Prints mary had a little lamb and she loved it so ?> Example #2 mb_strtolower(3) example with non-Latin UTF-8 text <?php $str = "Txiotn a nE Baos unuvn yn, dpaokeCei unp vw0po kuvs"; $str = mb_strtolower($str, 'UTF-8'); echo $str; // Prints txiotn a nE Baos unuvn yn, dpaokeCei unp vw0po kuvs ?> SEE ALSO
mb_strtoupper(3), mb_convert_case(3), strtolower(3). PHP Documentation Group MB_STRTOLOWER(3)
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