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Top Forums Programming Appending a column in xlsx file using Python Post 303000032 by durden_tyler on Monday 3rd of July 2017 08:16:56 AM
Old 07-03-2017
Quote:
Originally Posted by nans
when I do that, then the values of cpos goes into a loop
Code:
Scores(POS=u'73', ALT=u'G', REF=u'A')
2921689
Scores(POS=u'73', ALT=u'G', REF=u'A')
2921690
Scores(POS=u'73', ALT=u'G', REF=u'A')
2921691
Scores(POS=u'73', ALT=u'G', REF=u'A')

Ok, that's more descriptive now.
So the numbers you see: 2921689, 2921690, 2921691 are the row numbers of your spreadsheet.
The "Scores" value is the Python namedtuple value corresponding to (73, 'G', 'A').

Now in your Excel spreadsheet, (73, 'G', 'A') are the values of (E4, G4, F4), most likely <== can you confirm that?

So what's happening is that you are going to row_no = 5, but cpos is still equal to "Scores(pos=E4, alt=G4, ref=F4)".
When you are in row_no = 5, you need to recalculate cpos by picking up values from E5, G5, F5.

Same thing with row_no = 6, 7, 8, .... 2921689, 2921690, ...

In case the output is being printed too fast, change the condition "while cpos:" to "while row_no <= 10:".

---------- Post updated at 08:16 AM ---------- Previous update was at 08:10 AM ----------

Here is what your output should look like:

Code:
Scores(POS='73', ALT='Blah', REF='Blah')
5
Scores(POS='114', ALT='Blah', REF='Blah')
6
Scores(POS='263', ALT='Blah', REF='Blah')
7
Scores(POS='309', ALT='Blah', REF='Blah')
8
Scores(POS='497', ALT='Blah', REF='Blah')
9
Scores(POS='513', ALT='Blah', REF='Blah')
10
Scores(POS='750', ALT='Blah', REF='Blah')
11

This is based on the "S12.xlsx" you posted earlier in this thread.
This User Gave Thanks to durden_tyler For This Post:
 

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IO::Seekable(3pm)					 Perl Programmers Reference Guide					 IO::Seekable(3pm)

NAME
IO::Seekable - supply seek based methods for I/O objects SYNOPSIS
use IO::Seekable; package IO::Something; @ISA = qw(IO::Seekable); DESCRIPTION
"IO::Seekable" does not have a constructor of its own as it is intended to be inherited by other "IO::Handle" based objects. It provides methods which allow seeking of the file descriptors. $io->getpos Returns an opaque value that represents the current position of the IO::File, or "undef" if this is not possible (eg an unseekable stream such as a terminal, pipe or socket). If the fgetpos() function is available in your C library it is used to implements getpos, else perl emulates getpos using C's ftell() function. $io->setpos Uses the value of a previous getpos call to return to a previously visited position. Returns "0 but true" on success, "undef" on fail- ure. See perlfunc for complete descriptions of each of the following supported "IO::Seekable" methods, which are just front ends for the corre- sponding built-in functions: $io->seek ( POS, WHENCE ) Seek the IO::File to position POS, relative to WHENCE: WHENCE=0 (SEEK_SET) POS is absolute position. (Seek relative to the start of the file) WHENCE=1 (SEEK_CUR) POS is an offset from the current position. (Seek relative to current) WHENCE=2 (SEEK_END) POS is an offset from the end of the file. (Seek relative to end) The SEEK_* constants can be imported from the "Fcntl" module if you don't wish to use the numbers 0 1 or 2 in your code. Returns 1 upon success, 0 otherwise. $io->sysseek( POS, WHENCE ) Similar to $io->seek, but sets the IO::File's position using the system call lseek(2) directly, so will confuse most perl IO operators except sysread and syswrite (see perlfunc for full details) Returns the new position, or "undef" on failure. A position of zero is returned as the string "0 but true" $io->tell Returns the IO::File's current position, or -1 on error. SEE ALSO
perlfunc, "I/O Operators" in perlop, IO::Handle IO::File HISTORY
Derived from FileHandle.pm by Graham Barr <gbarr@pobox.com> perl v5.8.0 2002-06-01 IO::Seekable(3pm)
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