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Top Forums Programming Appending a column in xlsx file using Python Post 302999741 by durden_tyler on Tuesday 27th of June 2017 10:39:44 AM
Old 06-27-2017
I haven't gone through the entire code yet, and it might be tricky to test your code since I don't have pandas, but let me answer your question about the function call.

Quote:
Originally Posted by nans
...
Code:
#!/usr/bin/python
...
...
 # Subroutines
def get_text_data(txt_filename):
    dict_pos = {}
    Scores = namedtuple("Scores", ["POS", "ALT", "REF"])
    first_line = True
    with open('/home/test/scores.txt') as txt_filename:
        for line in txt_filename:
            if first_line:
                first_line = False
                continue
            line = line.rstrip('\n')
            x = line.split('\t')
            cpos = Scores(POS=x[0], ALT=x[2], REF=x[1])
            dict_pos[cpos] = x[3]
        print dict_pos          
        return dict_pos


def process_xl_sheets():
    for sheet_root, sheet_dirs, sheet_files in os.walk(sheet_directory):
        for sheet_file in sheet_files:
            if sheet_file.endswith('.xlsx'):
                print(sheet_file)
                dpos = get_text_data(sheet_file.replace('.xlsx', '.txt'))  ##what exactly is this part doing ? There is only one text file 'score.txt' to be referenced against several xlsx files named S12.xlsx , S13.xlsx etc
                sheet_xl_file = os.path.join(sheet_root, sheet_file)
...
 ...
# Main section
process_xl_sheets()

...
...
The replace() function replaces the value '.xlsx' to '.txt' in the string variable sheet_file.
The string variable sheet_file holds the name of your Excel file.
So, let's say while looping through the sheet_directory, your Python program finds an Excel file called "S12.xlsx". Then sheet_file will equal "S12.xlsx".

Thereafter, this expression:
Code:
sheet_file.replace('.xlsx', '.txt')

replaces '.xlsx' to '.txt' and thereby returns 'S12.txt'.

And then this value 'S12.txt' is passed to the function get_text_data().
That is, the value of the string parameter txt_filename is 'S12.txt'.

You can see this very quickly by printing txt_filename the moment you enter the function.

In the "with" statement inside the function "get_text_data", however, you use the same name txt_filename. That converts the string parameter txt_filename to a file object.

Thereafter, till the end of the function "get_text_data", txt_filename remains a file object.
So essentially, you are not using the txt_filename parameter in your function at all.

My suggestion: don't pass a parameter to a function if you are not using it at all. You anyway have the text file name ("scores.txt") and location hard-coded.
If something is not needed, discard it. Keep it simple.
This User Gave Thanks to durden_tyler For This Post:
 

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