Hi All,
How do I search first string & second string and copy all content between them from one file to another file?
Please help me..
Thanks In Advance.
Regards,
Pankaj (12 Replies)
Hiiii Friends
I have 2 files with huge data. I want to compare this 2 files & if they hav same set of vales in specific rows & columns i need to get that value from one file & replace it in other.
For example: I have few set data of both files here:
a.dat:
PDE-W 2009 12 16 5 29 11.11 ... (10 Replies)
1.compare 90 logs >20 print off with correct figure
2.compare latest log i.e ciscoresets_20120314 against all records not just the 90 (as above) and any lines not matching print as:
NEW:SYDGRE04,10,9 1
(note this number could be 2 or whatever not necessary 1 it could be 2,3 or even 10... (2 Replies)
- I have two files (File 1 and File 2) and the contents of the files are mentioned below.
- I am trying to compare the values of Column1 of File1 with Column1 of File2. If a match is found, print the corresponding value from Column2 of File1 in Column5 of File2.
- I tried to modify and use... (10 Replies)
I have file 1 & file 2 with content mentioned below. I want to get the output as shown in file3.
Requirement:
check the content of column 1 & column 2, if value of column 1 in file1 matches with first column of file2 then remaining columns(2&3) of file2 should get replaced, also if value of... (4 Replies)
Hi ladies and gentleman.. I have two text file with me. I need to replace one of the file content to another file if one both files have a matching pattern.
Example:
text1.txt:
ABCD 1234567,HELLO_WORLDA,HELLO_WORLDB
DCBA 3456789,HELLO_WORLDE,HELLO_WORLDF
text2.txt:
XXXX,ABCD... (25 Replies)
Hello,
I have two files file 1 and file 2 each having result of a query on certain database tables and need to compare for Col1 in file1 with Col3 in file2, compare Col2 with Col4 and output the value of Col1 from File1 which is a) not present in Col3 of File2 b) value of Col2 is different from... (2 Replies)
Hi,
I am having two folders where i need to compare the content of files and also to know if any new files been added and redirect the difference output in respective filename logs. For e.g.:
Directory D1:
f1
f2
f3
Directory D2:
f1
f2
f3
f4
i Need to compare the directories... (25 Replies)
I want to print only the lines in file2 that match file1, in the same order as they appear in file 1
file1
file2
desired output:
I'm getting the lines to match
awk 'FNR==NR {a++}; FNR!=NR && a' file1 file2
but they are in sorted order, which is not what I want:
Can anyone... (4 Replies)
Discussion started by: pathunkathunk
4 Replies
LEARN ABOUT DEBIAN
vcf-compare
VCF-COMPARE(1) User Commands VCF-COMPARE(1)NAME
vcf-compare - compare bgzipped and tabix indexed VCF files
SYNOPSIS
compare-vcf [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)
OPTIONS -c, --chromosomes <list|file>
Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future.
-d, --debug
Debugging information. Giving the option multiple times increases verbosity
-H, --cmp-haplotypes
Compare haplotypes, not only positions
-m, --name-mapping <list|file>
Use with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping
per line in a file. The names are colon separated and must appear in the same order as the files on the command line.
-R, --refseq <file>
Compare the actual sequence, not just positions. Use with -w to compare indels.
-r, --regions <list|file>
Process the given regions (comma-separated list or one region per line in a file).
-s, --samples <list>
Process only the listed samples. Excluding unwanted samples may increase performance considerably.
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
vcf-compare 0.1.5 July 2011 VCF-COMPARE(1)