awk to combine lines if fields match in lines Post: 302997484

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Top Forums Shell Programming and Scripting awk to combine lines if fields match in lines Post 302997484 by RavinderSingh13 on Monday 15th of May 2017 01:58:28 AM

05-15-2017

Moderator

Hello cmccabe,

Based on your shown sample output, could you please try following and let me know if this helps you.

Code:

awk '/SVTYPE=Fusion/{
                        match($5,/].*]/);
                        sub(/.COS.*/,"",$3);
                        sub(/-/,"",$3);
                        sub(/\./,"-",$3);
                        VAL=substr($5,RSTART+1,RLENGTH-2);
                        num=split($8, array,";");
                        for(i=1;i<=num;i++){
                                                if(array[i] ~  /SVTYPE/){
                                                sub(/.*=/,"",array[i]);
                                                svtype=array[i]
                                                                        };
                                                if(array[i] ~ /READ_COUNT/){
                                                sub(/.*=/,"",array[i]);
                                                read_count=array[i]
                                                                           }
                                           };
                        match($0,/oncomineGeneClass.*,/);
                        if(++A[$3]==1)
                                    {
                                        print $1":"$2 "-" VAL OFS svtype OFS substr($0,RSTART+20,RLENGTH-22) OFS $3 OFS read_count;
                                    }
                    next
                    }
        1
    '    Input_file

Thanks,
R. Singh

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igawk

IGAWK(1)							 Utility Commands							  IGAWK(1)

NAME

       igawk - gawk with include files

SYNOPSIS

       igawk [ all gawk options ] -f program-file [ -- ] file ...
       igawk [ all gawk options ] [ -- ] program-text file ...

DESCRIPTION

       Igawk is a simple shell script that adds the ability to have ``include files'' to gawk(1).

       AWK programs for igawk are the same as for gawk, except that, in addition, you may have lines like

	      @include getopt.awk

       in your program to include the file getopt.awk from either the current directory or one of the other directories in the search path.

OPTIONS

       See gawk(1) for a full description of the AWK language and the options that gawk supports.

EXAMPLES

       cat << EOF > test.awk
       @include getopt.awk

       BEGIN {
	    while (getopt(ARGC, ARGV, "am:q") != -1)
		 ...
       }
       EOF

       igawk -f test.awk

SEE ALSO

       gawk(1)

       Effective AWK Programming, Edition 1.0, published by the Free Software Foundation, 1995.

AUTHOR

       Arnold Robbins (arnold@skeeve.com).

Free Software Foundation					    Nov 3 1999								  IGAWK(1)