hi..im new to UNIX...
ok i have this information in the normal shell...
there are 2 lines display like this:
h@hotmail.com
k@hotmail.com
i want it to display like this with a space betweem them
h@hotmail.com k@hotmail.com
the information is stored in a text file....
anyone... (10 Replies)
Hi All,
I have 1 "keyword" file like this:
00-1F-FB-00-04-18
00-19-CB-8E-66-DF
00-1F-FB-00-48-9C
00-1F-FB-00-AA-4F
....
and the 2nd "details" file like this:
Wed Feb 11 00:00:02 2009
NAS-IP-Address = xxxxxxxxxxxxxxxxxx
Class = "P1-SHT-AAA01;1233704662;4886720"
... (6 Replies)
Hello, can someone help me how to find a word and 2 lines after it and then send the output to another file.
For example, here is myfile1.txt. I want to search for "Error" and 2 lines below it and send it to myfile2.txt
I tried with grep -A but it's not supported on my system.
I tried with awk,... (4 Replies)
Hello everyone,
Maybe somebody could help me with an awk script.
I have this input (field separator is comma ","):
547894982,M|N|J,U|Q|P,98,101,0,1,1
234900027,M|N|J,U|Q|P,98,101,0,1,1
234900023,M|N|J,U|Q|P,98,54,3,1,1
234900028,M|H|J,S|Q|P,98,101,0,1,1
234900030,M|N|J,U|F|P,98,101,0,1,1... (2 Replies)
URGENT HELP IS NEEDED!!
I am looking to move matching lines (01 - 07) from File1 and 77 tab the matching string from File2, to File3.txt. I am almost done but
- Currently, script is not printing lines to File3.txt in order.
- Also the matching lines are not moving out of File1.txt
... (1 Reply)
If a file has following kind of data, comma delimited
1,2,3,4
1
1
1,2,3,4
1,2
2
2,3,4
My required output must have only 4 columns with comma delimited
1,2,3,4
111,2,3,4
1,222,3,4
I have tried many awk command using ORS="" but couldnt progress (10 Replies)
I am trying to combine lines with these conditions:
1. First line starts with text of "libname VALUE db2 datasrc" where VALUE can be any text.
2. If condition1 is met then continue to combine lines through a line that ends with a semicolon.
3. Ignore case when matching patterns and remove any... (5 Replies)
I'm trying to use awk to count the occurrences of two matching fields of a CSV file.
For instance, for data that looks like this...
Joe,Blue,Yes,No,High
Mike,Blue,Yes,Yes,Low
Joe,Red,No,No,Low
Joe,Red,Yes,Yes,Low
I've been trying to use code like this...
countvar=`awk ' $2~/$color/... (4 Replies)
I am trying to combine all matching lines in the tab-delimited using awk. The below runs but no output results. Thank you :).
input
chrX 110925349 110925532 ALG13
chrX 110925349 110925532 ALG13
chrX 110925349 110925532 ALG13
chrX 47433390 47433999 SYN1... (3 Replies)
I have been searching and trying to come up with an awk that will perform the following on a
converted text file (original is a pdf).
1. Since the first two lines are (begin with) text they are removed
2. if $1 is a number then all text is merged (combined) into one line until the next... (3 Replies)
Discussion started by: cmccabe
3 Replies
LEARN ABOUT DEBIAN
bio::seqfeature::gene::genestructurei
Bio::SeqFeature::Gene::GeneStructureI(3pm) User Contributed Perl Documentation Bio::SeqFeature::Gene::GeneStructureI(3pm)NAME
Bio::SeqFeature::Gene::GeneStructureI - A feature representing an arbitrarily
complex structure of a gene
SYNOPSIS
#documentation needed
DESCRIPTION
A feature representing a gene structure.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Hilmar Lapp
Email hlapp@gmx.net
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
transcripts
Title : transcripts()
Usage : @transcripts = $gene->transcripts();
Function: Get the transcript features/sites of this gene structure.
See Bio::SeqFeature::Gene::TranscriptI for properties of the
returned objects.
Returns : An array of Bio::SeqFeature::Gene::TranscriptI implementing objects
representing the promoter regions or sites.
Args :
promoters
Title : promoters()
Usage : @prom_sites = $gene->promoters();
Function: Get the promoter features/sites of this gene structure.
Note that OO-modeling of regulatory elements is not stable yet.
This means that this method might change or even disappear in a
future release. Be aware of this if you use it.
Returns : An array of Bio::SeqFeatureI implementing objects representing the
promoter regions or sites.
Args :
exons
Title : exons()
Usage : @exons = $gene->exons();
@inital = $gene->exons('Initial');
Function: Get all exon features or all exons of specified type of this gene
structure.
Refer to the documentation of the class that produced this gene
structure object for information about the possible types.
See Bio::SeqFeature::Gene::ExonI for properties of the
returned objects.
Returns : An array of Bio::SeqFeature::Gene::ExonI implementing objects
representing the exon regions.
Args : An optional string specifying the type of the exon.
introns
Title : introns()
Usage : @introns = $gene->introns();
Function: Get all introns of this gene structure.
Returns : An array of Bio::SeqFeatureI implementing objects representing the
introns.
Args :
poly_A_sites
Title : poly_A_sites()
Usage : @polyAsites = $gene->poly_A_sites();
Function: Get the poly-adenylation features/sites of this gene structure.
Returns : An array of Bio::SeqFeatureI implementing objects representing the
poly-adenylation regions or sites.
Args :
utrs
Title : utrs()
Usage : @utr_sites = $gene->utrs();
Function: Get the UTR features/sites of this gene structure.
See Bio::SeqFeature::Gene::ExonI for properties of the
returned objects.
Returns : An array of Bio::SeqFeature::Gene::ExonI implementing objects
representing the UTR regions or sites.
Args :
perl v5.14.2 2012-03-02 Bio::SeqFeature::Gene::GeneStructureI(3pm)