Sponsored Content
Top Forums UNIX for Beginners Questions & Answers Reducing input file size after pattern search Post 302996292 by Don Cragun on Sunday 23rd of April 2017 08:54:50 PM
Old 04-23-2017
The following was written and tested using a Korn shell, but will work with any POSIX-conforming shell. It does, however, depend on the version of awk that you are using allowing multi-character record separators. (The standard allows awk to use multi-character RS value; but only requires that awk use the 1st character of RS. The GNU awk available on most Linux systems does this, so I assume it will work on your biolinux 8 system:
Code:
#!/bin/ksh
IAm=${0##*/}
if [ $# -ne 1 ]
then	printf 'Usage: %s input_file\n' "$IAm" >&2
	exit 1
fi
file=$1

awk -v strings="string-1 string-2 string-3 string-4" '
BEGIN {	RS = "@M"
	FS = "\n"
	ns = split(strings, s, / /)
}
FNR > 1 {
	for(i = ns; i > 0; i--)
		if(index($2, s[i])) {
			cnt++
			break
		}
	c[i]++
	printf("%s%s", RS, $0) > ("MID-" i ".txt")
}
END {	printf("Total\t%d\n", cnt)
	for(i = 1; i <= ns; i++) {
		close("MID-" i ".txt")
		printf("MID-%d\t%.1f\n", i, cnt ? 100 * c[i] / cnt : 0)
	}
	if(c[0])
		printf("\n%d unmatched record%s written to MID-0.txt\n", c[0],
		    (c[0] > 1) ? "s" : "")
}' "$file"

This User Gave Thanks to Don Cragun For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Search file for pattern and grab some lines before pattern

I want to search a file for a string and then if the string is found I need the line that the string is on - but also the previous two lines from the file (that the pattern will not be found in) This is on solaris Can you help? (2 Replies)
Discussion started by: frustrated1
2 Replies

2. Programming

reducing size of executeable in C under Unix

Hi, Could any one tell me how to reduce the size of an executable file of C under Unix. thanks (2 Replies)
Discussion started by: useless79
2 Replies

3. Solaris

reducing to root file size

My root file size has reached 80% and I am looking where all i can reduce the file size . Here is the output of top directories in / . To me none of this looks useful but not sure . We use an appplication and email. Which all can be deleted . Please advise . 2016989 989445 /var 930059 ... (2 Replies)
Discussion started by: Hitesh Shah
2 Replies

4. Shell Programming and Scripting

How to assign the Pattern Search string as Input Variable

guys, I need to know how to assing pattern matched string as an input command variable. Here it goes' My script is something like this. ./routing.sh <Server> <enable|disable> ## This Script takes an input <Server> variable from this line of the script ## echo $1 | egrep... (1 Reply)
Discussion started by: raghunsi
1 Replies

5. Shell Programming and Scripting

Search for a pattern in a String file and count the occurance of each pattern

I am trying to search a file for a patterns ERR- in a file and return a count for each of the error reported Input file is a free flowing file without any format example of output ERR-00001=5 .... ERR-01010=10 ..... ERR-99999=10 (4 Replies)
Discussion started by: swayam123
4 Replies

6. Shell Programming and Scripting

How to use sed to search a particular pattern in a file backward after a pattern is matched.?

Hi, I have two files file1.txt and file2.txt. Please see the attachments. In file2.txt (which actually is a diff output between two versions of file1.txt.), I extract the pattern corresponding to 1172c1172. Now ,In file1.txt I have to search for this pattern 1172c1172 and if found, I have to... (9 Replies)
Discussion started by: saurabh kumar
9 Replies

7. Shell Programming and Scripting

Reducing the decimal points of numbers (3d coordinates) in a file; how to input data to e.g. Python

I have a file full of coordinates of the form: 37.68899917602539 58.07500076293945 57.79100036621094 The numbers don't always have the same number of decimal points. I need to reduce the decimal points of all the numbers (there are 128 rows of 3 numbers) to 2. I have tried to do this... (2 Replies)
Discussion started by: crunchgargoyle
2 Replies

8. Shell Programming and Scripting

Search pattern in a file taking input from another file

Hi, Below is my requirement File1: svasjsdhvassdvasdhhgvasddhvasdhasdjhvasdjsahvasdjvdasjdvvsadjhv vdjvsdjasvdasdjbasdjbasdjhasbdasjhdbjheasbdasjdsajhbjasbjasbhddjb svfsdhgvfdshgvfsdhfvsdadhfvsajhvasjdhvsajhdvsadjvhasjhdvjhsadjahs File2: sdh hgv I need a command such that... (8 Replies)
Discussion started by: imrandec85
8 Replies

9. Shell Programming and Scripting

Grep command to search pattern corresponding to input from user

One more question: I want to grep "COS_12_TM_4 pattern from a file look likes : "COS_12_TM_4" " ];I am taking scan_out as the input from the user. How to search "COS_12_TM_4" in the file which is corresponds to scan_out (12 Replies)
Discussion started by: Preeti Chandra
12 Replies

10. UNIX for Beginners Questions & Answers

Grep/awk using a begin search pattern and end search pattern

I have this fileA TEST FILE ABC this file contains ABC; TEST FILE DGHT this file contains DGHT; TEST FILE 123 this file contains ABC, this file contains DEF, this file contains XYZ, this file contains KLM ; I want to have a fileZ that has only (begin search pattern for will be... (2 Replies)
Discussion started by: vbabz
2 Replies
A2P(1)							 Perl Programmers Reference Guide						    A2P(1)

NAME
a2p - Awk to Perl translator SYNOPSIS
a2p [options] [filename] DESCRIPTION
A2p takes an awk script specified on the command line (or from standard input) and produces a comparable perl script on the standard output. OPTIONS Options include: -D<number> sets debugging flags. -F<character> tells a2p that this awk script is always invoked with this -F switch. -n<fieldlist> specifies the names of the input fields if input does not have to be split into an array. If you were translating an awk script that processes the password file, you might say: a2p -7 -nlogin.password.uid.gid.gcos.shell.home Any delimiter can be used to separate the field names. -<number> causes a2p to assume that input will always have that many fields. -o tells a2p to use old awk behavior. The only current differences are: o Old awk always has a line loop, even if there are no line actions, whereas new awk does not. o In old awk, sprintf is extremely greedy about its arguments. For example, given the statement print sprintf(some_args), extra_args; old awk considers extra_args to be arguments to "sprintf"; new awk considers them arguments to "print". "Considerations" A2p cannot do as good a job translating as a human would, but it usually does pretty well. There are some areas where you may want to examine the perl script produced and tweak it some. Here are some of them, in no particular order. There is an awk idiom of putting int() around a string expression to force numeric interpretation, even though the argument is always integer anyway. This is generally unneeded in perl, but a2p can't tell if the argument is always going to be integer, so it leaves it in. You may wish to remove it. Perl differentiates numeric comparison from string comparison. Awk has one operator for both that decides at run time which comparison to do. A2p does not try to do a complete job of awk emulation at this point. Instead it guesses which one you want. It's almost always right, but it can be spoofed. All such guesses are marked with the comment ""#???"". You should go through and check them. You might want to run at least once with the -w switch to perl, which will warn you if you use == where you should have used eq. Perl does not attempt to emulate the behavior of awk in which nonexistent array elements spring into existence simply by being referenced. If somehow you are relying on this mechanism to create null entries for a subsequent for...in, they won't be there in perl. If a2p makes a split line that assigns to a list of variables that looks like (Fld1, Fld2, Fld3...) you may want to rerun a2p using the -n option mentioned above. This will let you name the fields throughout the script. If it splits to an array instead, the script is probably referring to the number of fields somewhere. The exit statement in awk doesn't necessarily exit; it goes to the END block if there is one. Awk scripts that do contortions within the END block to bypass the block under such circumstances can be simplified by removing the conditional in the END block and just exiting directly from the perl script. Perl has two kinds of array, numerically-indexed and associative. Perl associative arrays are called "hashes". Awk arrays are usually translated to hashes, but if you happen to know that the index is always going to be numeric you could change the {...} to [...]. Iteration over a hash is done using the keys() function, but iteration over an array is NOT. You might need to modify any loop that iterates over such an array. Awk starts by assuming OFMT has the value %.6g. Perl starts by assuming its equivalent, $#, to have the value %.20g. You'll want to set $# explicitly if you use the default value of OFMT. Near the top of the line loop will be the split operation that is implicit in the awk script. There are times when you can move this down past some conditionals that test the entire record so that the split is not done as often. For aesthetic reasons you may wish to change index variables from being 1-based (awk style) to 0-based (Perl style). Be sure to change all operations the variable is involved in to match. Cute comments that say "# Here is a workaround because awk is dumb" are passed through unmodified. Awk scripts are often embedded in a shell script that pipes stuff into and out of awk. Often the shell script wrapper can be incorporated into the perl script, since perl can start up pipes into and out of itself, and can do other things that awk can't do by itself. Scripts that refer to the special variables RSTART and RLENGTH can often be simplified by referring to the variables $`, $& and $', as long as they are within the scope of the pattern match that sets them. The produced perl script may have subroutines defined to deal with awk's semantics regarding getline and print. Since a2p usually picks correctness over efficiency. it is almost always possible to rewrite such code to be more efficient by discarding the semantic sugar. For efficiency, you may wish to remove the keyword from any return statement that is the last statement executed in a subroutine. A2p catches the most common case, but doesn't analyze embedded blocks for subtler cases. ARGV[0] translates to $ARGV0, but ARGV[n] translates to $ARGV[$n-1]. A loop that tries to iterate over ARGV[0] won't find it. ENVIRONMENT
A2p uses no environment variables. AUTHOR
Larry Wall <larry@wall.org> FILES
SEE ALSO
perl The perl compiler/interpreter s2p sed to perl translator DIAGNOSTICS
BUGS
It would be possible to emulate awk's behavior in selecting string versus numeric operations at run time by inspection of the operands, but it would be gross and inefficient. Besides, a2p almost always guesses right. Storage for the awk syntax tree is currently static, and can run out. perl v5.14.2 2010-12-30 A2P(1)
All times are GMT -4. The time now is 12:05 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy