I made a typo in on of the file1 lines, BCRA1 should be BCRA2.
file1
current output: FULL GENE SEQUENC could also be case in sensitive so I added a check in for that... why isn't FULL GENE SEQUENCE used, when I try that I get all the names with a value of 279.
desired output
Thank you .
Last edited by cmccabe; 03-19-2017 at 06:09 PM..
Reason: fixed format
Hello!
I am writing a program to run through two large lists of data (~300,000 rows), find where rows in one file match another, and combine them based on matching fields. Due to the large file sizes, I'm guessing AWK will be the most efficient way to do this. Overall, the input and output I'm... (5 Replies)
grep -v will exclude matching lines, but I want something that will print all lines but exclude a matching field. The pattern that I want excluded is '/mnt/svn'
If there is a better solution than awk I am happy to hear about it, but I would like to see this done in awk as well. I know I can... (11 Replies)
I am trying to look for $2 of file1 (skipping the header) in $2 of file2 (skipping the header) and if they match and the value in $10 is > 30 and $11 is > 49, then print the line from file1 to a output file. If no match is foung the line is not printed. Both the input and output are tab-delimited.... (3 Replies)
In the below I am trying to use awk to match all the $13 values in input, which is tab-delimited,
that are in $1 of gene which is just a single column of text.
However only the line with the greatest $9 value in input needs to be printed.
So in the example below all the MECP2 and LTBP1... (0 Replies)
Hi everyone,
Given two files (test1 and test2) with the following contents:
test1:
80263760,I71
80267369,M44
80274628,L77
80276793,I32
80277390,K05
80277391,I06
80279206,I43
80279859,K37
80279866,K35
80279867,J16
80280346,I14and test2:
80263760,PT18
80279867,PT01I need to do some... (3 Replies)
Hi,
I have 2 tab-delimited input files as follows.
file1.tab:
green A apple
red B apple
file2.tab:
apple - A;Z
Objective:
Return $1 of file1 if,
. $1 of file2 matches $3 of file1 and,
. any single element (separated by ";") in $3 of file2 is present in $2 of file1
In order to... (3 Replies)
In the awk below I am trying to output those lines that Match between file1 and file2, those Missing in file1, and those missing in file2. Using each $1,$2,$4,$5 value as a key to match on, that is if those 4 fields are found in both files the match, but if those 4 fields are not found then missing... (0 Replies)
I've written an awk script to compare two fields in two different files and then print portions of each file on the same line when matched. It works reasonably well, but every now and again, I notice some errors and cannot seem to figure out what the issue may be and am turning to you for help.
... (2 Replies)
Hi, I have two TEST files t.xyz and a.xyz which have three columns each. a.xyz have more rows than t.xyz. I will like to output rows at which $1 and $2 of t.xyz match $1 and $2 of a.xyz. Total number of output rows should be equal to that of t.xyz.
It works fine, but when I apply it to large... (6 Replies)
I am trying to parse two csv files and make a match in one column then print the entire file to a new file and append an additional column that gives description from the match to the new file. If a match is not made, I would like to add "NA" to the end of the file
Command that Ive been using... (6 Replies)
Discussion started by: dis0wned
6 Replies
LEARN ABOUT DEBIAN
combine
COMBINE(1)COMBINE(1)NAME
combine - combine sets of lines from two files using boolean operations
SYNOPSIS
combine file1 and file2
combine file1 not file2
combine file1 or file2
combine file1 xor file2
_ file1 and file2 _
_ file1 not file2 _
_ file1 or file2 _
_ file1 xor file2 _
DESCRIPTION
combine combines the lines in two files. Depending on the boolean operation specified, the contents will be combined in different ways:
and Outputs lines that are in file1 if they are also present in file2.
not Outputs lines that are in file1 but not in file2.
or Outputs lines that are in file1 or file2.
xor Outputs lines that are in either file1 or file2, but not in both files.
"-" can be specified for either file to read stdin for that file.
The input files need not be sorted, and the lines are output in the order they occur in file1 (followed by the order they occur in file2
for the two "or" operations). Bear in mind that this means that the operations are not commutative; "a and b" will not necessarily be the
same as "b and a". To obtain commutative behavior sort and uniq the result.
Note that this program can be installed as "_" to allow for the syntactic sugar shown in the latter half of the synopsis (similar to the
test/[ command). It is not currently installed as "_" by default, but you can alias it to that if you like.
SEE ALSO join(1)AUTHOR
Copyright 2006 by Joey Hess <joey@kitenet.net>
Licensed under the GNU GPL.
moreutils 2012-04-09 COMBINE(1)