I made a typo in on of the file1 lines, BCRA1 should be BCRA2.
file1
current output: FULL GENE SEQUENC could also be case in sensitive so I added a check in for that... why isn't FULL GENE SEQUENCE used, when I try that I get all the names with a value of 279.
desired output
Thank you .
Last edited by cmccabe; 03-19-2017 at 06:09 PM..
Reason: fixed format
Hello!
I am writing a program to run through two large lists of data (~300,000 rows), find where rows in one file match another, and combine them based on matching fields. Due to the large file sizes, I'm guessing AWK will be the most efficient way to do this. Overall, the input and output I'm... (5 Replies)
grep -v will exclude matching lines, but I want something that will print all lines but exclude a matching field. The pattern that I want excluded is '/mnt/svn'
If there is a better solution than awk I am happy to hear about it, but I would like to see this done in awk as well. I know I can... (11 Replies)
I am trying to look for $2 of file1 (skipping the header) in $2 of file2 (skipping the header) and if they match and the value in $10 is > 30 and $11 is > 49, then print the line from file1 to a output file. If no match is foung the line is not printed. Both the input and output are tab-delimited.... (3 Replies)
In the below I am trying to use awk to match all the $13 values in input, which is tab-delimited,
that are in $1 of gene which is just a single column of text.
However only the line with the greatest $9 value in input needs to be printed.
So in the example below all the MECP2 and LTBP1... (0 Replies)
Hi everyone,
Given two files (test1 and test2) with the following contents:
test1:
80263760,I71
80267369,M44
80274628,L77
80276793,I32
80277390,K05
80277391,I06
80279206,I43
80279859,K37
80279866,K35
80279867,J16
80280346,I14and test2:
80263760,PT18
80279867,PT01I need to do some... (3 Replies)
Hi,
I have 2 tab-delimited input files as follows.
file1.tab:
green A apple
red B apple
file2.tab:
apple - A;Z
Objective:
Return $1 of file1 if,
. $1 of file2 matches $3 of file1 and,
. any single element (separated by ";") in $3 of file2 is present in $2 of file1
In order to... (3 Replies)
In the awk below I am trying to output those lines that Match between file1 and file2, those Missing in file1, and those missing in file2. Using each $1,$2,$4,$5 value as a key to match on, that is if those 4 fields are found in both files the match, but if those 4 fields are not found then missing... (0 Replies)
I've written an awk script to compare two fields in two different files and then print portions of each file on the same line when matched. It works reasonably well, but every now and again, I notice some errors and cannot seem to figure out what the issue may be and am turning to you for help.
... (2 Replies)
Hi, I have two TEST files t.xyz and a.xyz which have three columns each. a.xyz have more rows than t.xyz. I will like to output rows at which $1 and $2 of t.xyz match $1 and $2 of a.xyz. Total number of output rows should be equal to that of t.xyz.
It works fine, but when I apply it to large... (6 Replies)
I am trying to parse two csv files and make a match in one column then print the entire file to a new file and append an additional column that gives description from the match to the new file. If a match is not made, I would like to add "NA" to the end of the file
Command that Ive been using... (6 Replies)
Discussion started by: dis0wned
6 Replies
LEARN ABOUT OSF1
merge
merge(1)merge(1)NAME
merge - three-way file merge
SYNOPSIS
merge [-Llabel1 [-Llabel3]] [-p] [-q] file1 file2 file3
DESCRIPTION
merge incorporates all changes that lead from file2 to file3 into file1. The result goes to standard output if -p is present, into file1
otherwise. merge is useful for combining separate changes to an original. Suppose file2 is the original, and both file1 and file3 are
modifications of file2. Then merge combines both changes.
An overlap occurs if both file1 and file3 have changes in a common segment of lines. On a few older hosts where diff3 does not support the
-E option, merge does not detect overlaps, and merely supplies the changed lines from file3. On most hosts, if overlaps occur, merge out-
puts a message (unless the -q option is given), and includes both alternatives in the result. The alternatives are delimited as follows:
<<<<<<< file1 lines in file1 ======= lines in file3 >>>>>>> file3
If there are overlaps, the user should edit the result and delete one of the alternatives. If the -L label1 and -L label3 options are
given, the labels are output in place of the names file1 and file3 in overlap reports.
DIAGNOSTICS
Exit status is 0 for no overlaps, 1 for some overlaps, 2 for trouble.
IDENTIFICATION
Author: Walter F. Tichy.
Revision Number: 1.1.6.2; Release Date: 1993/10/07.
Copyright (C) 1982, 1988, 1989 by Walter F. Tichy.
Copyright (C) 1990, 1991 by Paul Eggert.
SEE ALSO diff3(1), diff(1), rcsmerge(1), co(1)merge(1)