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Full Discussion: awk to print fields that match using conditions and a default value for non-matching in two files
Top Forums Shell Programming and Scripting awk to print fields that match using conditions and a default value for non-matching in two files Post 302994134 by Chubler_XL on Sunday 19th of March 2017 04:34:44 PM
Old 03-19-2017
Try these changes:

Code:
awk 'BEGIN{FS=OFS="\t"}
{$0=toupper($0)}
FNR==NR{
   if(NR>1 && ($7 ~ "FULL GENE SEQUENC")) {
          gsub(" ","",$5)       #removing white space
          n=split($5,v,"/")
          d[v[1]] = $4          #from split, first element as key
      }
      next
}{print $1, ($1 in d?d[$1]:279)}' file2 file1

This User Gave Thanks to Chubler_XL For This Post:
cmccabe
 

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LEARN ABOUT DEBIAN

gchem3d

GCHEM3D(1)						       gnome-chemistry-utils							GCHEM3D(1)

NAME

       gchem3d - a small chemical viewer application

SYNOPSIS

       gchem3d [OPTION(S)...] [FILE...]

DESCRIPTION

       gchem3d is a small chemical viewer application, which can show several chemical file formats.

OPTIONS

       The following options are accepted:

       -b COLOR, --bgcolor=COLOR
	   Use the given color as background color.  COLOR can be one of "black" (default), "white", "#rrggbb" (don't forget to escape the "#"
	   character in the shell).

       -d MODEL, --display3d=MODEL
	   Choose how molecules are displayed.	MODEL can be one of "BallnStick" (default), "SpaceFill".

       -?, --help
	   Show application help options.

       --help-all, --help-*
	   Print all or just a group of help options. These options are not documented here. Instead see gtk-options(7) and gnome-options(7).

       -v, --version
	   Print gchem3d version information.

SEE ALSO

       gnome-options(7), gtk-options(7)

AUTHORS

       Jean Brefort <jean.brefort@normalesup.org>
	   Program author.

       Daniel Leidert <daniel.leidert@wgdd.de>
	   Manpage author.

COPYRIGHT

       Copyright (C) 2002-2007 Jean Brefort
       Copyright (C) 2004-2007 Daniel Leidert

       Permission is granted to copy, distribute and/or modify this document under the terms of the GNU General Public License, Version 2 or any
       later version published by the Free Software Foundation.

gcu 0.12				      $Date: 2009-03-19 10:53:47 +0100 (jeu. 19 mars 2009) $					GCHEM3D(1)
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