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Full Discussion: awk to print fields that match using conditions and a default value for non-matching in two files
Top Forums Shell Programming and Scripting awk to print fields that match using conditions and a default value for non-matching in two files Post 302994134 by Chubler_XL on Sunday 19th of March 2017 04:34:44 PM
Old 03-19-2017
Try these changes:

Code:
awk 'BEGIN{FS=OFS="\t"}
{$0=toupper($0)}
FNR==NR{
   if(NR>1 && ($7 ~ "FULL GENE SEQUENC")) {
          gsub(" ","",$5)       #removing white space
          n=split($5,v,"/")
          d[v[1]] = $4          #from split, first element as key
      }
      next
}{print $1, ($1 in d?d[$1]:279)}' file2 file1

This User Gave Thanks to Chubler_XL For This Post:
cmccabe
 

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set_color(1)							       fish							      set_color(1)

NAME

       set_color - set_color - set the terminal color

set_color - set the terminal color
   Synopsis
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   Description
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