I am trying to print the output of a command to two separate files. Is it possible to use awk to print $1 to one file and $2 to another file?
Thanks in advance! (1 Reply)
Hello!
I am writing a program to run through two large lists of data (~300,000 rows), find where rows in one file match another, and combine them based on matching fields. Due to the large file sizes, I'm guessing AWK will be the most efficient way to do this. Overall, the input and output I'm... (5 Replies)
Hi,
I am working with two tab-delimited files with multiple columns, formatted as follows:
File 1:
>chrom 1 100 A G 20 …(10 columns)
>chrom 1 104 G C 18 …(10 columns)
>chrom 2 28 T C ... (4 Replies)
Hi
I have 2 files as below
File 1
Chr Start End
chr1 120 130
chr1 140 150
chr2 130 140
File2
Chr Start End Value
chr1 121 128 ABC
chr1 144 149 XYZ
chr2 120 129 PQR
I would like to compare these files using awk; specifically if column 1 of file1 is equal to column 1 of file2... (7 Replies)
grep -v will exclude matching lines, but I want something that will print all lines but exclude a matching field. The pattern that I want excluded is '/mnt/svn'
If there is a better solution than awk I am happy to hear about it, but I would like to see this done in awk as well. I know I can... (11 Replies)
Dear AWK-experts!
I did get stuck in the task of combining files after matching fields, so I'm still awkward with learning AWK.
There are 2 files: one containing 3 columns with ID, coding status, and score for long noncoding RNAs:
file1 (1.txt) (>5000 lines)
... (12 Replies)
Hi All
I am having one awk and sed requirement for the below problem.
I tried multiple options in my sed or awk and right output is not coming out.
Problem Description
###############################################################
I am having a big file say file having repeated... (4 Replies)
Trying to use awk to match the contents of each line in file1 with $5 in file2. Both files are tab-delimited and there may be a space or special character in the name being matched in file2, for example in file1 the name is BRCA1 but in file2 the name is BRCA 1 or in file1 name is BCR but in file2... (6 Replies)
I apologize in advance, but I continue to have trouble searching for matches between two files and then printing portions of each to output in awk and would very much appreciate some help.
I have data as follows:
File1
PS012,002 PRQ 0 1 1 17 1 0 -1 3 2 1 2 -1 ... (7 Replies)
Hello all, I am having trouble with what should be an easy task, but seem to be missing something fundamental. I have two files, with File 1 consisting of a single field of many thousands of records. I also have File 2 with two fields and many thousands of records.
My goal is that when $1 of... (2 Replies)
Discussion started by: jvoot
2 Replies
LEARN ABOUT DEBIAN
csv2mipe
CSV2MIPE(1) User Contributed Perl Documentation CSV2MIPE(1)NAME
csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
based on MIPE version v1.1
arguments: * tab-delimited file with PCR-level data
* tab-delimited file with SNP-level data
* tab-delimited file with assay-level data
Columns in file with PCR-level data:
pcr_id
pcr_modified (might be multiple, divided by semi-colon ";")
pcr_project (might be multiple, divided by semi-colon ";")
pcr_researcher (might be multiple, divided by semi-colon ";")
pcr_species
source_type
source_id
design_seq
primer1_oligo
primer1_seq
primer1_tm
primer2_oligo
primer2_seq
primer2_tm
design_remark (might be multiple, divided by semi-colon ";")
use_seq
use_revcomp
use_remark (might be multiple, divided by semi-colon ";")
pcr_remark (might be multiple, divided by semi-colon ";")
Columns in file with SNP-level data:
pcr_id
snp_id
snp_pos
snp_amb
snp_remark (might be multiple, divided by semi-colon ";")
Columns in file with assay-level data:
pcr_id
snp_id
assay_id
assay_type
assay_enzyme
assay_oligo
assay_specific
assay_tail
assay_strand
assay_remark (might be multiple, divided by semi-colon ";")
SYNOPSIS
csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>
ADDITIONAL INFO
See http://mipe.sourceforge.net
AUTHOR
Jan Aerts (jan.aerts@bbsrc.ac.uk)
perl v5.14.2 2005-07-20 CSV2MIPE(1)