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Top Forums Shell Programming and Scripting awk to supress error message with custom text Post 302993455 by RavinderSingh13 on Thursday 9th of March 2017 09:54:03 PM
Old 03-09-2017
Hello cmccabe,

String variantchecker): Intronic position given for a non-genomic reference sequence. will NOT be considered as a 2nd field because you have set the field separator as default which will be space and in above string we have many spaces, so condition with $2=="above_string" will NOT be TRUE.
Could you please try following and let me know if this helps.
Code:
awk '/variantchecker): Intronic position given for a non-genomic reference sequence./{print $1 " is an intronic variant."}'   Input_file

Thanks,
R. Singh
This User Gave Thanks to RavinderSingh13 For This Post:
 

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IGAWK(1)							 Utility Commands							  IGAWK(1)

NAME
igawk - gawk with include files SYNOPSIS
igawk [ all gawk options ] -f program-file [ -- ] file ... igawk [ all gawk options ] [ -- ] program-text file ... DESCRIPTION
Igawk is a simple shell script that adds the ability to have ``include files'' to gawk(1). AWK programs for igawk are the same as for gawk, except that, in addition, you may have lines like @include getopt.awk in your program to include the file getopt.awk from either the current directory or one of the other directories in the search path. OPTIONS
See gawk(1) for a full description of the AWK language and the options that gawk supports. EXAMPLES
cat << EOF > test.awk @include getopt.awk BEGIN { while (getopt(ARGC, ARGV, "am:q") != -1) ... } EOF igawk -f test.awk SEE ALSO
gawk(1) Effective AWK Programming, Edition 1.0, published by the Free Software Foundation, 1995. AUTHOR
Arnold Robbins (arnold@skeeve.com). ATTRIBUTES
See attributes(5) for descriptions of the following attributes: +--------------------+-----------------+ | ATTRIBUTE TYPE | ATTRIBUTE VALUE | +--------------------+-----------------+ |Availability | SUNWgawk | +--------------------+-----------------+ |Interface Stability | Volatile | +--------------------+-----------------+ NOTES
Source for gawk is available on http://opensolaris.org. Free Software Foundation Nov 3 1999 IGAWK(1)
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