String variantchecker): Intronic position given for a non-genomic reference sequence. will NOT be considered as a 2nd field because you have set the field separator as default which will be space and in above string we have many spaces, so condition with $2=="above_string" will NOT be TRUE.
Could you please try following and let me know if this helps.
Thanks,
R. Singh
This User Gave Thanks to RavinderSingh13 For This Post:
Does anyone know how I can supress the "Killed" message that's produced when I kill a process? I've got a script that performs a "tail -f" on a database error log and pipes the output into an awk script which looks for certain error messages and forwards any that qualify to my pager. The problem... (2 Replies)
Hi All
this is a simple script
#! /bin/bash
FileCnt=`ls -lrt $DIR/* | wc -l`
echo $FileCnt
how could i escape the error msg if there are no files in $DIR
ls: /home/sayantan/test/files/cnt/*: No such file or directory
0
Looking forward for a quick reply
Regards, Newbie (2 Replies)
How can I modify my awk code to get rid of the divion by zero error message? If I run the script without an input file, it should return error message "Input file missing" but not divison by zero.
Code:
#!/bin/nawk -f
BEGIN {
if (NR == 0)
{print "Input file... (4 Replies)
Hi
I have a script which connects to oracle using sqlplus
if ! check_sqlplus "$ORACLE_SID" ; then
echo "Unable to use sqlplus for sid $ORACLE_SID"
return 1
else
echo "attempting to connect to database"
echo $ORACLE_HOME
echo $ORACLE_SID
echo "Status before entering... (2 Replies)
Hi Friends,
I am using the below code in my script:
elif
then
NEW_LINE=`echo $Line | awk '{sub ($4, "2010\\\/04\\\/07"); printf "# %s %9s %18s\n", $2,$3,$4}'`
sed $n" s/.*/$NEW_LINE/" kfile > tmp
mv tmp kfile
fi
Around 30 lines are replaced by this code... (2 Replies)
Hi,
I am trying to run a script using awk and sed a few times.
The script itself seems to work fine but in a final awk statement it throws up a warning:
awk: warning: escape sequence `\.' treated as plain `.'
script:
... (3 Replies)
Hi,
I was looking for a simple code to suppress the text between 2 characters. the characters can be of same kind like "*" or "(" and ")". The number of characters are not consistent and could vary.
How can I suppress the text between 2 characters?
Example:
Input : Hello (Within Bracket)... (8 Replies)
Hello,
I know this isn't exactly a shell script question but I'm not sure where else to post it.
I am running a java program out of a shell script. There are times when I get an error like,
"java.lang.ArrayIndexOutOfBoundsException: 22
at blah, blah
at blah, blah
... (3 Replies)
Hello :
I want to make a netfilter conntrack module for myself. So I copy all the source code about netfilter conntrack from kernel source tree to my external directory. It can be insmod after compiled. Then I add some members to the struct nf_conn, and it 's compiled successfully. However, it... (1 Reply)
Discussion started by: 915086731
1 Replies
LEARN ABOUT OPENSOLARIS
igawk
IGAWK(1) Utility Commands IGAWK(1)NAME
igawk - gawk with include files
SYNOPSIS
igawk [ all gawk options ] -f program-file [ -- ] file ...
igawk [ all gawk options ] [ -- ] program-text file ...
DESCRIPTION
Igawk is a simple shell script that adds the ability to have ``include files'' to gawk(1).
AWK programs for igawk are the same as for gawk, except that, in addition, you may have lines like
@include getopt.awk
in your program to include the file getopt.awk from either the current directory or one of the other directories in the search path.
OPTIONS
See gawk(1) for a full description of the AWK language and the options that gawk supports.
EXAMPLES
cat << EOF > test.awk
@include getopt.awk
BEGIN {
while (getopt(ARGC, ARGV, "am:q") != -1)
...
}
EOF
igawk -f test.awk
SEE ALSO gawk(1)
Effective AWK Programming, Edition 1.0, published by the Free Software Foundation, 1995.
AUTHOR
Arnold Robbins (arnold@skeeve.com).
ATTRIBUTES
See attributes(5) for descriptions of the following attributes:
+--------------------+-----------------+
| ATTRIBUTE TYPE | ATTRIBUTE VALUE |
+--------------------+-----------------+
|Availability | SUNWgawk |
+--------------------+-----------------+
|Interface Stability | Volatile |
+--------------------+-----------------+
NOTES
Source for gawk is available on http://opensolaris.org.
Free Software Foundation Nov 3 1999 IGAWK(1)