String variantchecker): Intronic position given for a non-genomic reference sequence. will NOT be considered as a 2nd field because you have set the field separator as default which will be space and in above string we have many spaces, so condition with $2=="above_string" will NOT be TRUE.
Could you please try following and let me know if this helps.
Thanks,
R. Singh
This User Gave Thanks to RavinderSingh13 For This Post:
Does anyone know how I can supress the "Killed" message that's produced when I kill a process? I've got a script that performs a "tail -f" on a database error log and pipes the output into an awk script which looks for certain error messages and forwards any that qualify to my pager. The problem... (2 Replies)
Hi All
this is a simple script
#! /bin/bash
FileCnt=`ls -lrt $DIR/* | wc -l`
echo $FileCnt
how could i escape the error msg if there are no files in $DIR
ls: /home/sayantan/test/files/cnt/*: No such file or directory
0
Looking forward for a quick reply
Regards, Newbie (2 Replies)
How can I modify my awk code to get rid of the divion by zero error message? If I run the script without an input file, it should return error message "Input file missing" but not divison by zero.
Code:
#!/bin/nawk -f
BEGIN {
if (NR == 0)
{print "Input file... (4 Replies)
Hi
I have a script which connects to oracle using sqlplus
if ! check_sqlplus "$ORACLE_SID" ; then
echo "Unable to use sqlplus for sid $ORACLE_SID"
return 1
else
echo "attempting to connect to database"
echo $ORACLE_HOME
echo $ORACLE_SID
echo "Status before entering... (2 Replies)
Hi Friends,
I am using the below code in my script:
elif
then
NEW_LINE=`echo $Line | awk '{sub ($4, "2010\\\/04\\\/07"); printf "# %s %9s %18s\n", $2,$3,$4}'`
sed $n" s/.*/$NEW_LINE/" kfile > tmp
mv tmp kfile
fi
Around 30 lines are replaced by this code... (2 Replies)
Hi,
I am trying to run a script using awk and sed a few times.
The script itself seems to work fine but in a final awk statement it throws up a warning:
awk: warning: escape sequence `\.' treated as plain `.'
script:
... (3 Replies)
Hi,
I was looking for a simple code to suppress the text between 2 characters. the characters can be of same kind like "*" or "(" and ")". The number of characters are not consistent and could vary.
How can I suppress the text between 2 characters?
Example:
Input : Hello (Within Bracket)... (8 Replies)
Hello,
I know this isn't exactly a shell script question but I'm not sure where else to post it.
I am running a java program out of a shell script. There are times when I get an error like,
"java.lang.ArrayIndexOutOfBoundsException: 22
at blah, blah
at blah, blah
... (3 Replies)
Hello :
I want to make a netfilter conntrack module for myself. So I copy all the source code about netfilter conntrack from kernel source tree to my external directory. It can be insmod after compiled. Then I add some members to the struct nf_conn, and it 's compiled successfully. However, it... (1 Reply)
Discussion started by: 915086731
1 Replies
LEARN ABOUT PLAN9
join
JOIN(1) General Commands Manual JOIN(1)NAME
join - relational database operator
SYNOPSIS
join [ options ] file1 file2
DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If one of the file names is the
standard input is used.
File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in
each line.
There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con-
sists of the common field, then the rest of the line from file1, then the rest of the line from file2.
Input fields are normally separated spaces or tabs; output fields by space. In this case, multiple separators count as one, and leading
separators are discarded.
The following options are recognized, with POSIX syntax.
-a n In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2.
-v n Like -a, omitting output for paired lines.
-e s Replace empty output fields by string s.
-1 m
-2 m Join on the mth field of file1 or file2.
-jn m Archaic equivalent for -n m.
-ofields
Each output line comprises the designated fields. The comma-separated field designators are either 0, meaning the join field, or
have the form n.m, where n is a file number and m is a field number. Archaic usage allows separate arguments for field designators.
-tc Use character c as the only separator (tab character) on input and output. Every appearance of c in a line is significant.
EXAMPLES
sort /adm/users | join -t: -a 1 -e "" - bdays
Add birthdays to password information, leaving unknown birthdays empty. The layout of is given in users(6); bdays contains sorted
lines like
tr : ' ' </adm/users | sort -k 3 3 >temp
join -1 3 -2 3 -o 1.1,2.1 temp temp | awk '$1 < $2'
Print all pairs of users with identical userids.
SOURCE
/sys/src/cmd/join.c
SEE ALSO sort(1), comm(1), awk(1)BUGS
With default field separation, the collating sequence is that of sort -b -ky,y; with -t, the sequence is that of sort -tx -ky,y.
One of the files must be randomly accessible.
JOIN(1)