Sponsored Content
Top Forums Shell Programming and Scripting Perl to run different parser based on digit Post 302993230 by Chubler_XL on Tuesday 7th of March 2017 08:28:40 PM
Old 03-07-2017
Try this:

Code:
perl -ne 'next if $. == 1;
    if(/.*del([A-Z]+)ins([A-Z]+).*NC_0+([^.]+)\..*g\.([0-9]+)_([0-9]+)/)   # indel
    {
            print join("\t", $3, $4, $5, $1, $2), "\n";
            }
                       ' out_position.txt > out.txt

This User Gave Thanks to Chubler_XL For This Post:
 

9 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

xml parser in perl

hi all i want to read xml file in perl i am using XML::Simple for this. i am not getting how to read following file removing xml file due to some reason (1 Reply)
Discussion started by: zedex
1 Replies

2. Shell Programming and Scripting

Perl XML:Parser help

I am very new to XML. Really I have an excel file that I am trying to read w/ Perl on a Linux machine. I don't have a mod for reading excel files so I have to convert the excel file to xml to be able to read it. I can read the file and everything is ok except...the Number style is being dropped... (0 Replies)
Discussion started by: vincaStar
0 Replies

3. Shell Programming and Scripting

xml-parser with perl

Hello I want to write an xml- parser with perl an i use the libary XML::LibXML. I have a problem with the command getElementsByTagName. If there is an empty tag, the getElementsByTagName method returns a NodeList of length zero. how can i check if this is a nodelist of lenght zero?? i... (1 Reply)
Discussion started by: trek
1 Replies

4. Shell Programming and Scripting

perl config parser

Hello. Can anybody help me with some sub on perl that can parse config like this: %CFG ( 'databases' => { 'db1' => 'db_11', 'db_12', 'db_13', 'db2' => 'db_21', 'db_22', 'db_23' } 'datafiles' => { 'datadir1' => 'datadir_11', 'datadir_12', 'datadir2' =>... (4 Replies)
Discussion started by: drack
4 Replies

5. Shell Programming and Scripting

Split large file based on last digit from a column

Hello, What's the best way to split a large into multiple files based on the last digit in the first column. input file: f 2738483300000x0y03772748378831x1y13478378358383x2y23743878383802x3y33787828282820x4y43748838383881x5y5 Desired Output: f0 3738483300000x0y03787828282820x4y4 f1... (9 Replies)
Discussion started by: alain.kazan
9 Replies

6. Shell Programming and Scripting

Where to find 64-bit based perl module like XML::Parser::Expat?

Q: Where to get a 64 bit Expat.so? I run a perl script and got this error: Can't load '/usr/perl5/vendor_perl/5.8.4/i86pc-solaris-64int/auto/XML/Parser/Expat/Expat.so' for module XML:parser::Expat: ld.so.1:myPerl: fatal:... (0 Replies)
Discussion started by: lilili07
0 Replies

7. Programming

Parser - multiple in Perl

Dear Perl Experts, Could some body help me to find the solution for my problem below: Input file: ----------- THE-0 tsjp THE-32 tsjp THE-64 tsjp Output desired: --------------- THE-0&&-31 tsjp THE-32&&-63 tsjp THE-64&&-95 tsjp Note: 31 = 0+31, (2 Replies)
Discussion started by: askari
2 Replies

8. Shell Programming and Scripting

Update perl code with parser

The below perl code imports the data in the attached document. However, I can not seem to update the perl code to include a parser like in the desired tab of that document. Thank you :). Most of the data for the parse is included in the document except for the gene and RNA which can is... (0 Replies)
Discussion started by: cmccabe
0 Replies

9. UNIX for Beginners Questions & Answers

Cut first value after underscore and replace first two digit with zero in perl

Like I have below string XX_49154534_491553_201_122023_D XX_49159042_491738_201_103901_D and the expected output would be 0154534 0159042 XX and 49 can be dynamic. (1 Reply)
Discussion started by: nadeemrafikhan
1 Replies
set_color(1)							       fish							      set_color(1)

NAME
set_color - set_color - set the terminal color set_color - set the terminal color Synopsis set_color [-v --version] [-h --help] [-b --background COLOR] [COLOR] Description Change the foreground and/or background color of the terminal. COLOR is one of black, red, green, brown, yellow, blue, magenta, purple, cyan, white and normal. o -b, --background Set the background color o -c, --print-colors Prints a list of all valid color names o -h, --help Display help message and exit o -o, --bold Set bold or extra bright mode o -u, --underline Set underlined mode o -v, --version Display version and exit Calling set_color normal will set the terminal color to whatever is the default color of the terminal. Some terminals use the --bold escape sequence to switch to a brighter color set. On such terminals, set_color white will result in a grey font color, while set_color --bold white will result in a white font color. Not all terminal emulators support all these features. This is not a bug in set_color but a missing feature in the terminal emulator. set_color uses the terminfo database to look up how to change terminal colors on whatever terminal is in use. Some systems have old and incomplete terminfo databases, and may lack color information for terminals that support it. Download and install the latest version of ncurses and recompile fish against it in order to fix this issue. Version 1.23.1 Sun Jan 8 2012 set_color(1)
All times are GMT -4. The time now is 11:42 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy