I thought I understood, but not entirely , but you are correct those are the 3 conditions that are possible. Thank you very much .
Code:
perl -ne 'next if $. == 1;
if(/.*del([A-Z]+)ins([A-Z]+).'s/NC_0+(.*?)\..*/$1/; print') # indel
{
print join("\t", $3, $4, $5, $1, $2), "\n";
}
' out_position.txt > out.txt
Unknown regexp modifier "/N" at -e line 2, at end of line
Unknown regexp modifier "/C" at -e line 2, at end of line
Unknown regexp modifier "/_" at -e line 2, at end of line
Unknown regexp modifier "/0" at -e line 2, at end of line
syntax error at -e line 2, near "(."
Execution of -e aborted due to compilation errors.
Last edited by cmccabe; 03-07-2017 at 09:14 PM..
Reason: added details
hi all i want to read xml file in perl i am using XML::Simple for this. i am not getting how to read following file
removing xml file due to some reason (1 Reply)
I am very new to XML. Really I have an excel file that I am trying to read w/ Perl on a Linux machine. I don't have a mod for reading excel files so I have to convert the excel file to xml to be able to read it. I can read the file and everything is ok except...the Number style is being dropped... (0 Replies)
Hello
I want to write an xml- parser with perl an i use the libary XML::LibXML.
I have a problem with the command getElementsByTagName.
If there is an empty tag, the getElementsByTagName method returns a NodeList of length zero.
how can i check if this is a nodelist of lenght zero??
i... (1 Reply)
Hello.
Can anybody help me with some sub on perl that can parse config like this:
%CFG (
'databases' => {
'db1' => 'db_11', 'db_12', 'db_13',
'db2' => 'db_21', 'db_22', 'db_23'
}
'datafiles' => {
'datadir1' => 'datadir_11', 'datadir_12',
'datadir2' =>... (4 Replies)
Hello,
What's the best way to split a large into multiple files based on the last digit in the first column.
input file:
f
2738483300000x0y03772748378831x1y13478378358383x2y23743878383802x3y33787828282820x4y43748838383881x5y5
Desired Output:
f0
3738483300000x0y03787828282820x4y4
f1... (9 Replies)
Q: Where to get a 64 bit Expat.so?
I run a perl script and got this error:
Can't load '/usr/perl5/vendor_perl/5.8.4/i86pc-solaris-64int/auto/XML/Parser/Expat/Expat.so' for module XML:parser::Expat: ld.so.1:myPerl: fatal:... (0 Replies)
Dear Perl Experts,
Could some body help me to find the solution for my problem below:
Input file:
-----------
THE-0 tsjp
THE-32 tsjp
THE-64 tsjp
Output desired:
---------------
THE-0&&-31 tsjp
THE-32&&-63 tsjp
THE-64&&-95 tsjp
Note:
31 = 0+31, (2 Replies)
The below perl code imports the data in the attached document. However, I can not seem to update the perl code to include a parser like in the desired tab of that document. Thank you :).
Most of the data for the parse is included in the document except for the gene and RNA which can is... (0 Replies)
Like I have below string
XX_49154534_491553_201_122023_D
XX_49159042_491738_201_103901_D
and the expected output would be
0154534
0159042
XX and 49 can be dynamic. (1 Reply)
Discussion started by: nadeemrafikhan
1 Replies
LEARN ABOUT MOJAVE
trim
textutil::trim(n) Text and string utilities, macro processing textutil::trim(n)
__________________________________________________________________________________________________________________________________________________NAME
textutil::trim - Procedures to trim strings
SYNOPSIS
package require Tcl 8.2
package require textutil::trim ?0.7?
::textutil::trim::trim string ?regexp?
::textutil::trim::trimleft string ?regexp?
::textutil::trim::trimright string ?regexp?
::textutil::trim::trimPrefix string prefix
::textutil::trim::trimEmptyHeading string
_________________________________________________________________DESCRIPTION
The package textutil::trim provides commands that trim strings using arbitrary regular expressions.
The complete set of procedures is described below.
::textutil::trim::trim string ?regexp?
Remove in string any leading and trailing substring according to the regular expression regexp and return the result as a new
string. This is done for all lines in the string, that is any substring between 2 newline chars, or between the beginning of the
string and a newline, or between a newline and the end of the string, or, if the string contain no newline, between the beginning
and the end of the string. The regular expression regexp defaults to "[ \t]+".
::textutil::trim::trimleft string ?regexp?
Remove in string any leading substring according to the regular expression regexp and return the result as a new string. This apply
on any line in the string, that is any substring between 2 newline chars, or between the beginning of the string and a newline, or
between a newline and the end of the string, or, if the string contain no newline, between the beginning and the end of the string.
The regular expression regexp defaults to "[ \t]+".
::textutil::trim::trimright string ?regexp?
Remove in string any trailing substring according to the regular expression regexp and return the result as a new string. This apply
on any line in the string, that is any substring between 2 newline chars, or between the beginning of the string and a newline, or
between a newline and the end of the string, or, if the string contain no newline, between the beginning and the end of the string.
The regular expression regexp defaults to "[ \t]+".
::textutil::trim::trimPrefix string prefix
Removes the prefix from the beginning of string and returns the result. The string is left unchanged if it doesn't have prefix at
its beginning.
::textutil::trim::trimEmptyHeading string
Looks for empty lines (including lines consisting of only whitespace) at the beginning of the string and removes it. The modified
string is returned as the result of the command.
BUGS, IDEAS, FEEDBACK
This document, and the package it describes, will undoubtedly contain bugs and other problems. Please report such in the category textutil
of the Tcllib SF Trackers [http://sourceforge.net/tracker/?group_id=12883]. Please also report any ideas for enhancements you may have for
either package and/or documentation.
SEE ALSO
regexp(n), split(n), string(n)
KEYWORDS
prefix, regular expression, string, trimming
CATEGORY
Text processing
textutil 0.7 textutil::trim(n)
03-07-2017
, but you are correct those are the 3 conditions that are possible. Thank you very much