I thought I understood, but not entirely , but you are correct those are the 3 conditions that are possible. Thank you very much .
Code:
perl -ne 'next if $. == 1;
if(/.*del([A-Z]+)ins([A-Z]+).'s/NC_0+(.*?)\..*/$1/; print') # indel
{
print join("\t", $3, $4, $5, $1, $2), "\n";
}
' out_position.txt > out.txt
Unknown regexp modifier "/N" at -e line 2, at end of line
Unknown regexp modifier "/C" at -e line 2, at end of line
Unknown regexp modifier "/_" at -e line 2, at end of line
Unknown regexp modifier "/0" at -e line 2, at end of line
syntax error at -e line 2, near "(."
Execution of -e aborted due to compilation errors.
Last edited by cmccabe; 03-07-2017 at 09:14 PM..
Reason: added details
hi all i want to read xml file in perl i am using XML::Simple for this. i am not getting how to read following file
removing xml file due to some reason (1 Reply)
I am very new to XML. Really I have an excel file that I am trying to read w/ Perl on a Linux machine. I don't have a mod for reading excel files so I have to convert the excel file to xml to be able to read it. I can read the file and everything is ok except...the Number style is being dropped... (0 Replies)
Hello
I want to write an xml- parser with perl an i use the libary XML::LibXML.
I have a problem with the command getElementsByTagName.
If there is an empty tag, the getElementsByTagName method returns a NodeList of length zero.
how can i check if this is a nodelist of lenght zero??
i... (1 Reply)
Hello.
Can anybody help me with some sub on perl that can parse config like this:
%CFG (
'databases' => {
'db1' => 'db_11', 'db_12', 'db_13',
'db2' => 'db_21', 'db_22', 'db_23'
}
'datafiles' => {
'datadir1' => 'datadir_11', 'datadir_12',
'datadir2' =>... (4 Replies)
Hello,
What's the best way to split a large into multiple files based on the last digit in the first column.
input file:
f
2738483300000x0y03772748378831x1y13478378358383x2y23743878383802x3y33787828282820x4y43748838383881x5y5
Desired Output:
f0
3738483300000x0y03787828282820x4y4
f1... (9 Replies)
Q: Where to get a 64 bit Expat.so?
I run a perl script and got this error:
Can't load '/usr/perl5/vendor_perl/5.8.4/i86pc-solaris-64int/auto/XML/Parser/Expat/Expat.so' for module XML:parser::Expat: ld.so.1:myPerl: fatal:... (0 Replies)
Dear Perl Experts,
Could some body help me to find the solution for my problem below:
Input file:
-----------
THE-0 tsjp
THE-32 tsjp
THE-64 tsjp
Output desired:
---------------
THE-0&&-31 tsjp
THE-32&&-63 tsjp
THE-64&&-95 tsjp
Note:
31 = 0+31, (2 Replies)
The below perl code imports the data in the attached document. However, I can not seem to update the perl code to include a parser like in the desired tab of that document. Thank you :).
Most of the data for the parse is included in the document except for the gene and RNA which can is... (0 Replies)
Like I have below string
XX_49154534_491553_201_122023_D
XX_49159042_491738_201_103901_D
and the expected output would be
0154534
0159042
XX and 49 can be dynamic. (1 Reply)
Discussion started by: nadeemrafikhan
1 Replies
LEARN ABOUT MOJAVE
ppi::statement::unknown
PPI::Statement::Unknown(3) User Contributed Perl Documentation PPI::Statement::Unknown(3)NAME
PPI::Statement::Unknown - An unknown or transient statement
INHERITANCE
PPI::Statement::Unknown
isa PPI::Statement
isa PPI::Node
isa PPI::Element
DESCRIPTION
The "PPI::Statement::Unknown" class is used primarily during the lexing process to hold elements that are known to be statement, but for
which the exact "type" of statement is as yet unknown, and requires further tokens in order to resolve the correct type.
They should not exist in a fully parse valid document, and if any exists they indicate either a problem in Document, or possibly (by
allowing it to get through unresolved) a bug in PPI::Lexer.
METHODS
"PPI::Statement::Unknown" has no additional methods beyond the default ones provided by PPI::Statement, PPI::Node and PPI::Element.
SUPPORT
See the support section in the main module.
AUTHOR
Adam Kennedy <adamk@cpan.org>
COPYRIGHT
Copyright 2001 - 2011 Adam Kennedy.
This program is free software; you can redistribute it and/or modify it under the same terms as Perl itself.
The full text of the license can be found in the LICENSE file included with this module.
perl v5.18.2 2011-02-25 PPI::Statement::Unknown(3)
03-07-2017
, but you are correct those are the 3 conditions that are possible. Thank you very much