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Top Forums Shell Programming and Scripting Rename text file with a specific pattern in directory Post 302991428 by drysdalk on Friday 10th of February 2017 11:20:55 AM
Old 02-10-2017
Hi,

I've come up with the following script which does what you need, I think:

Code:
#!/bin/bash

pattern1="variant_strandbias_readcount.vcf."
pattern2_old="hg19_multianno"
pattern2_new="hg19multianno"
pattern3="_dbremoved_removed_final_index_inheritence_import_classify"

for file in `/bin/ls *.txt`
do
        newname=`echo $file | /bin/sed s/$pattern1//g | /bin/sed s/$pattern2_old/$pattern2_new/g | /bin/sed s/$pattern3//g`
        /bin/mv -fv $file $newname
done

If I run it, this is what I get:

Code:
$ ls -1
16-0000_File-A_variant_strandbias_readcount.vcf.hg19_multianno_dbremoved_removed_final_index_inheritence_import_classify.txt
16-0002_File-B_variant_strandbias_readcount.vcf.hg19_multianno_dbremoved_removed_final_index_inheritence_import_classify.txt
16-0005_File-C_variant_strandbias_readcount.vcf.hg19_multianno_dbremoved_removed_final_index_inheritence_import_classify.txt
script.sh
$ ./script.sh 
'16-0000_File-A_variant_strandbias_readcount.vcf.hg19_multianno_dbremoved_removed_final_index_inheritence_import_classify.txt' -> '16-0000_File-A_hg19multianno.txt'
'16-0002_File-B_variant_strandbias_readcount.vcf.hg19_multianno_dbremoved_removed_final_index_inheritence_import_classify.txt' -> '16-0002_File-B_hg19multianno.txt'
'16-0005_File-C_variant_strandbias_readcount.vcf.hg19_multianno_dbremoved_removed_final_index_inheritence_import_classify.txt' -> '16-0005_File-C_hg19multianno.txt'
$ ls -1
16-0000_File-A_hg19multianno.txt
16-0002_File-B_hg19multianno.txt
16-0005_File-C_hg19multianno.txt
script.sh
$

Hope this helps.
This User Gave Thanks to drysdalk For This Post:
 

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PREZIP-BIN(1)						 Aspell Abbreviated User's Manual					     PREZIP-BIN(1)

NAME
prezip-bin - prefix zip delta word list compressor/decompressor SYNOPSIS
prezip-bin [ -V | -d | -z ] DESCRIPTION
prezip-bin compresses/decompresses sorted word lists from standard input to standard output. Prezip-bin is similar to word-list-compress(1) but it allows a larger character set of {0x00...0x09, 0x0B, 0x0C, 0x0E...0xFF} and multi-words larger than 255 characters in length. It can also decompress word-list-compress(1) compatible files. COMMANDS
Prezip-bin accepts only one of these commands. -V Display prezip-bin version number to standard output. -d Read a compressed word list from standard input and decompress it to standard output. This can be a word-list-compress(1) or a prezip-bin compressed file. -z Read a binary word list from standard input and compress it to standard output. EXAMPLES
prezip-bin -d <wordlist.cwl >wordlist.txt Decompress file wordlist.cwl to text file wordlist.txt prezip-bin -z <wordlist.txt >wordlist.pz 2>errors.txt Compress wordlist.txt to binary file wordlist.pz and send any error messages to a text file named errors.txt LC_COLLATE=C sort -u <wordlist.txt | prezip-bin -z >wordlist.pz Sort a word list, then pipe it to prezip-bin to create a compressed binary wordlist.pz file. prezip-bin -d <words.pz | aspell create master ./words.rws Decompress a wordlist, then pipe it to aspell(1) to create a spelling list. Please check the aspell(1) info manual for proper usage and options. TIPS
Prezip-bin is best used with sorted word list type files. It is not a general purpose compression program since resulting files may actu- ally increase in size. Unlike word-list-compress(1) if your word list has leading or trailing blank spaces for formatting purposes, you should remove them first before you compress your list using prezip-bin -z , otherwise those spaces will be included in the compressed binary output. DIAGNOSTICS
Prezip-bin normally exits with a return code of 0. If it encounters an error, a message is sent to standard error output (stderr), and prezip-bin exits with a non-zero return value. Error messages are listed below: (display help/usage message) Unknown command given on the command line so prezip-bin displays a usage message to standard error output. unknown format The input file appears not to be an expected format, or may possibly be a more advanced format. The output file will be empty. corrupt input This is only for the decompression command -d. The input file appeared to be of a correct format, but something appears wrong now. There may be some valid data in output, but due to input corruption, the rest of the file can not be completed. unexpected EOF The input file appeared okay but ended sooner than expected, therefore the output file is not complete. SEE ALSO
aspell(1), aspell-import(1), run-with-aspell(1), word-list-compress(1) Aspell is fully documented in its Texinfo manual. See the `aspell' entry in info for more complete documentation. REPORTING BUGS
For help, see the Aspell homepage at <http://aspell.net>. Send bug reports/comments to the Aspell user list at the above address. AUTHOR
This info page was written by Jose Da Silva <digital@joescat.com>. prezip-bin-0.1.2 2005-09-30 PREZIP-BIN(1)
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